RNA id: TU112690


Basic Information

Item Value
RNA id TU112690
length 575
RNA type TUCP
GC content 0.45
exon number 4
gene id G99041
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9924418 ~ 9925654 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGGAACACCCACTCAGGCTTAACTACAGATTCTCAGAGTGCAGTGAACAGCTAAGCATTCCAAAATGCTGCATTATTTTGTGGTATTCTCTTGCCTTTATGCCATGAGCATGACCATGCCTTTACCTGATTATTACTCGTACTCCCCTGCTGCGGGGGATGGCAGTGGAACTGAATTTTCCACCGCAAATGAGGGTCGCATCACTGGAGTCAGAGTTTATGAATACCCCTACTATGGATACTACTACAACAACTACCTCAATGGGCTCCAGTTGCAATATAACGGTAACTGGACAGCACTGGTTGGCACGAACGGTTATGGCAATGAAAAGGAAATGACACTCTTCGACAACGAATATTTTGTTCAAGTCTCTGGAAAGTATTACTCTGGTTATATCTCTGAGCTTATGTTTGTCACTAATGAGGGGCGCTCTTTTAAAGTGGGGCAGCCTACTGGACTTTCATTTAACTTCTACCCAACCCATGATGGAAGTGAACTACGTTTCCTCAGCGGTCGACAGAATGGATTTGCCCTGACCTCCATTGGGGCTCACTGGGCTGTGTTTAACAACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112715 lncRNA upstream 3939 9920267 ~ 9920479 (+) True G99062
TU112706 lncRNA upstream 24339 9899553 ~ 9900079 (+) False G99056
TU112705 lncRNA upstream 24339 9899655 ~ 9900079 (+) True G99056
TU112689 lncRNA upstream 60195 9864003 ~ 9864223 (+) True G99040
TU112683 lncRNA upstream 67570 9856512 ~ 9856848 (+) True G99034
TU112942 lncRNA downstream 45087 9970741 ~ 9971353 (+) False CI01000016_09970010_09999304
TU112943 lncRNA downstream 45087 9970741 ~ 9971291 (+) True CI01000016_09970010_09999304
TU112986 lncRNA downstream 142590 10068244 ~ 10068606 (+) True G99281
TU112988 lncRNA downstream 144251 10069905 ~ 10070116 (+) True G99283
TU112989 lncRNA downstream 144465 10070119 ~ 10070348 (+) True G99284
CI01000016_09897221_09902690.mRNA mRNA upstream 21536 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 38185 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_09796196_09842235.mRNA mRNA upstream 81842 9795950 ~ 9842576 (+) False CI01000016_09796196_09842235
CI01000016_09788926_09791625.mRNA mRNA upstream 132495 9788926 ~ 9791923 (+) True CI01000016_09788926_09791625
CI01000016_09748780_09759954.mRNA mRNA upstream 164035 9748780 ~ 9760383 (+) True CI01000016_09748780_09759954
CI01000016_09934128_09954587.mRNA mRNA downstream 8474 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09970010_09999304.mRNA mRNA downstream 44261 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_10042324_10051398.mRNA mRNA downstream 116362 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_10333877_10334229.mRNA mRNA downstream 408223 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 409604 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
TU112665 other upstream 127478 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 921701 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1908643 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2138695 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 2763128 7160641 ~ 7161290 (+) True G96389
TU113122 other downstream 308746 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 368737 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1745991 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 2234987 12160641 ~ 12162845 (+) False G100178

Expression Profile