RNA id: TU114030


Basic Information

Item Value
RNA id TU114030
length 204
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G100209
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10003756 ~ 10003959 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCGCAAACAAGGTAGTTTATTGACACCAGTAGAGTGAAACAGCAGTGAAAGTGGATATAACTTAAGCAGTGATGATGAATGGAGTGCTGAATGGTGATACTGTCCTTTTGGTGGTTGCAGTTGTGGAGAACTTGAGTGACGCTGGAGAATCTTGACACGGAGAACAGAGAACACTCACACACTGACGGAGAATCACACGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112937 lncRNA downstream 40512 9962957 ~ 9963244 (-) True CI01000016_09959197_09962175
TU112898 lncRNA downstream 85580 9917896 ~ 9918176 (-) True G99225
TU112890 lncRNA downstream 115606 9887657 ~ 9888150 (-) True G99217
TU112889 lncRNA downstream 116169 9887373 ~ 9887587 (-) True G99216
TU112873 lncRNA downstream 147927 9855622 ~ 9855829 (-) True G99204
TU114034 lncRNA upstream 12194 10016153 ~ 10016831 (-) True G100213
TU114035 lncRNA upstream 12997 10016956 ~ 10017211 (-) True G100214
TU114036 lncRNA upstream 13837 10017796 ~ 10018869 (-) True G100215
TU114037 lncRNA upstream 16844 10020803 ~ 10021100 (-) True G100216
TU114038 lncRNA upstream 17544 10021503 ~ 10021778 (-) True G100217
CI01000016_09959197_09962175.mRNA mRNA downstream 40571 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_09739013_09746676.mRNA mRNA downstream 257080 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 342559 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09638800_09651752.mRNA mRNA downstream 352004 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09510177_09512196.mRNA mRNA downstream 491391 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_10025722_10027148.mRNA mRNA upstream 21543 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_10089136_10135299.mRNA mRNA upstream 84757 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10228314_10299064.mRNA mRNA upstream 224355 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10386099_10386648.mRNA mRNA upstream 381866 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10443526_10488009.mRNA mRNA upstream 438886 10442845 ~ 10488186 (-) True CI01000016_10443526_10488009
TU112845 other downstream 188801 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 491328 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 491394 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 491394 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 746145 9256102 ~ 9257611 (-) True G98691
TU114011 other upstream 47209 10051168 ~ 10052389 (-) True G100190

Expression Profile