RNA id: TU114036


Basic Information

Item Value
RNA id TU114036
length 1074
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G100215
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10017796 ~ 10018869 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGCGATTCACATTAGCAAGTAGGAATTCTCTAGCATTTATGTGTGATTGCTGTGACAAATTAAGCCCATTTCAGAAAAAAATATGGTTTATGTGTAATGTGGTGAGAGCCAAACAGCAAGATTGAACTACCACTAGCCTCATCATTGAAAGTGTGAATAAAGCACTTTGGATGAATGGACCATCAAGTACTGCTTTAATTGGATGGTTGTGGGGTGTCAAACTGAGGTTAAACGTATTTGCTGTGTACACAAATATGAAGCTGGGAATTTGATCTATTCTGAAAGTGAGAATTGGCCTCTGAATTAGAGAATTTTAAATGACTCTGTATCTGCTTTTTTACAGTTGACACTGTTGTTTTTGTTATTATGTAGAAAACAGATTCTCTTATAGGCCTACTTATAATTATTCAAAATTGGCTTTTTGTATTGTTTACATTCTATTTTGTCTTTAAAACCTGTAATTTTATTTAATTCCTTTTTCCTCTTTACCTATTGTTTGCCAGATAACCTTTGGCACTGTTTTTTTTTTTTTTTTTTTTTTTCAGGACTTTTTGATGGCATTTTCTTTGTGACAGGACACGGTTTTGCAGGAGATGTTAAGAAGATTTTTTATGCCTTTTAGTGTTTAGTGGGGATATGTACACCTGGGAAGCTTTACAAGCAATACATTTAGCAGTATATGCCAAATAATCATACAATGAATATAAATGATGGTGATGAACAATAGAATTTTGTTTTAGAAATTTGTTACCAAGTTCTGGTTTTACATGTAATTAATCATAAACTAAACTATGTTTTATTTCAATTATATTTACGACATGTTGGTACAATAATTTATAAACATGTTTACAAATCGTGCTGAAGCCAGTATAAAATTAATTTTTTTTTTAGATCACAAATAATTTGTAGGTACCACTTTTTTTTTTACAGTGTCCTTGTTACACATTACATGTACTTACTGTAGTAATAACAGTAAAGTATGGATAATTACACGCAACTAACCCTAAATCAAACCCGATTACACTTTATTTTAGTGTCTTTGTTACACTGTAATTACACATTTAAGTACTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114035 lncRNA downstream 585 10016956 ~ 10017211 (-) True G100214
TU114034 lncRNA downstream 965 10016153 ~ 10016831 (-) True G100213
TU114030 lncRNA downstream 13837 10003756 ~ 10003959 (-) True G100209
TU112937 lncRNA downstream 54552 9962957 ~ 9963244 (-) True CI01000016_09959197_09962175
TU112898 lncRNA downstream 99620 9917896 ~ 9918176 (-) True G99225
TU114037 lncRNA upstream 1934 10020803 ~ 10021100 (-) True G100216
TU114038 lncRNA upstream 2634 10021503 ~ 10021778 (-) True G100217
TU114045 lncRNA upstream 14145 10033014 ~ 10033276 (-) True G100224
TU114059 lncRNA upstream 63931 10082800 ~ 10083035 (-) True G100235
TU114060 lncRNA upstream 64450 10083319 ~ 10083633 (-) True G100236
CI01000016_09959197_09962175.mRNA mRNA downstream 54611 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_09739013_09746676.mRNA mRNA downstream 271120 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 356599 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09638800_09651752.mRNA mRNA downstream 366044 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09510177_09512196.mRNA mRNA downstream 505431 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_10025722_10027148.mRNA mRNA upstream 6633 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_10089136_10135299.mRNA mRNA upstream 69847 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10228314_10299064.mRNA mRNA upstream 209445 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10386099_10386648.mRNA mRNA upstream 366956 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10443526_10488009.mRNA mRNA upstream 423976 10442845 ~ 10488186 (-) True CI01000016_10443526_10488009
TU112845 other downstream 202841 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 505368 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 505434 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 505434 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 760185 9256102 ~ 9257611 (-) True G98691
TU114011 other upstream 32299 10051168 ~ 10052389 (-) True G100190

Expression Profile