RNA id: TU114045


Basic Information

Item Value
RNA id TU114045
length 263
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G100224
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10033014 ~ 10033276 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCTGAGGGAACACAACAGTTCCAAAACACACTTTGACTATATTTAATAAAATTATCTTTAATTGTCACAGTAAAACATTTTGAAGTCATTGTGGTATTTTGTATACCTTATGACAACATGGTCAATGGTTGCCCCCTTGTTTGGACCCTTGTGCTCCATTGACTTATTGAAATCTTATTGAGGGTGCAAAACATCACCATTAAAATGTTAAAAACTGACAATATGTAAAATATGTGTCAACAGCAATCAAGATATGTAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114038 lncRNA downstream 11236 10021503 ~ 10021778 (-) True G100217
TU114037 lncRNA downstream 11914 10020803 ~ 10021100 (-) True G100216
TU114036 lncRNA downstream 14145 10017796 ~ 10018869 (-) True G100215
TU114035 lncRNA downstream 15803 10016956 ~ 10017211 (-) True G100214
TU114034 lncRNA downstream 16183 10016153 ~ 10016831 (-) True G100213
TU114059 lncRNA upstream 49524 10082800 ~ 10083035 (-) True G100235
TU114060 lncRNA upstream 50043 10083319 ~ 10083633 (-) True G100236
TU114063 lncRNA upstream 58468 10091744 ~ 10092160 (-) True G100239
TU114064 lncRNA upstream 62310 10095586 ~ 10095880 (-) True G100240
TU114071 lncRNA upstream 82056 10115332 ~ 10115591 (-) True G100247
CI01000016_10025722_10027148.mRNA mRNA downstream 5755 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_09959197_09962175.mRNA mRNA downstream 69829 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_09739013_09746676.mRNA mRNA downstream 286338 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 371817 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09638800_09651752.mRNA mRNA downstream 381262 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_10089136_10135299.mRNA mRNA upstream 55440 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10228314_10299064.mRNA mRNA upstream 195038 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10386099_10386648.mRNA mRNA upstream 352549 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10443526_10488009.mRNA mRNA upstream 409569 10442845 ~ 10488186 (-) True CI01000016_10443526_10488009
CI01000016_10571262_10572444.mRNA mRNA upstream 537429 10570705 ~ 10573868 (-) True CI01000016_10571262_10572444
TU112845 other downstream 218059 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 520586 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 520652 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 520652 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 775403 9256102 ~ 9257611 (-) True G98691
TU114011 other upstream 17892 10051168 ~ 10052389 (-) True G100190

Expression Profile