RNA id: TU112986


Basic Information

Item Value
RNA id TU112986
length 363
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G99281
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10068244 ~ 10068606 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCAAAACTGCCTAAAGTTACAGAATATAATATCGACCCAGGATGAGGTATAGGACTGTGAAGCTTTGGGGGTGTTGATGGACTCAATCTACTCCATCTATGTTTTGACCATCATTCTGAATCCGATTCAGACATAGTCTTTGACAAAAAAGTGATTTTCTCAGCTTTTTGTTCAAAATGTTTTTTTTTAATGAAATTTACCCACATTAAGTGTTGATAAAAAAGCTAGAATAAAATGTGAAAACACACTTGGGTCACCATCACACATTTTACCTTGTTCTAGTTAAGTCTAAGAATTTTAGTTTTATAATTTTTTTTTTTTTTAATTGACTGAAAGGCTTCTAGGAAAGCCATTAAATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112942 lncRNA upstream 96891 9970741 ~ 9971353 (+) False CI01000016_09970010_09999304
TU112943 lncRNA upstream 96953 9970741 ~ 9971291 (+) True CI01000016_09970010_09999304
TU112716 lncRNA upstream 127420 9921181 ~ 9940824 (+) True G99063
TU112715 lncRNA upstream 147765 9920267 ~ 9920479 (+) True G99062
TU112706 lncRNA upstream 168165 9899553 ~ 9900079 (+) False G99056
TU112988 lncRNA downstream 1299 10069905 ~ 10070116 (+) True G99283
TU112989 lncRNA downstream 1513 10070119 ~ 10070348 (+) True G99284
TU112992 lncRNA downstream 5744 10074350 ~ 10074666 (+) True G99287
TU112993 lncRNA downstream 7095 10075701 ~ 10076012 (+) True G99288
TU112994 lncRNA downstream 7633 10076239 ~ 10076512 (+) True G99289
CI01000016_10042324_10051398.mRNA mRNA upstream 15877 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 67523 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 112916 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 165362 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 182011 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 265271 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 266652 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 351969 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 439858 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 518593 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU112690 other upstream 142590 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 271304 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1065527 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2052469 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2282521 7785226 ~ 7785723 (+) True G97766
TU113122 other downstream 165794 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 225785 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1603039 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 2092035 12160641 ~ 12162845 (+) False G100178

Expression Profile