RNA id: TU112992


Basic Information

Item Value
RNA id TU112992
length 317
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G99287
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10074350 ~ 10074666 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAACATGACATTGACAATGCTGTACCCTACAAGCCAAACTAGGACAAGGTCATCAAGGAACAACAGTACAACTGTTGTTAGGGCTGATATTGCATTAATATTATAGCGGAGTAAGATCTACTAGTTCCTCTGTAACAGATGCATGAGATTTACATTGACATTACATTGATTTAGTAGGAACGTTTATCCAATGTATACCAGAATAGTACAAATTTCAGCTGTAAACTCCAATCTTGAATTTGATGCAGGCAGCTTTATGTGGATAGCCAAAGGAGTGTGACATGGACCCTCCTTGAAGACTAGACACACATGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112989 lncRNA upstream 4002 10070119 ~ 10070348 (+) True G99284
TU112988 lncRNA upstream 4234 10069905 ~ 10070116 (+) True G99283
TU112986 lncRNA upstream 5744 10068244 ~ 10068606 (+) True G99281
TU112942 lncRNA upstream 102997 9970741 ~ 9971353 (+) False CI01000016_09970010_09999304
TU112943 lncRNA upstream 103059 9970741 ~ 9971291 (+) True CI01000016_09970010_09999304
TU112993 lncRNA downstream 1035 10075701 ~ 10076012 (+) True G99288
TU112994 lncRNA downstream 1573 10076239 ~ 10076512 (+) True G99289
TU112998 lncRNA downstream 9161 10083827 ~ 10084034 (+) True G99293
TU112999 lncRNA downstream 12458 10087124 ~ 10087501 (+) True G99294
TU113000 lncRNA downstream 13395 10088061 ~ 10088282 (+) True G99295
CI01000016_10042324_10051398.mRNA mRNA upstream 21983 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 73629 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 119022 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 171468 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 188117 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 259211 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 260592 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 345909 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 433798 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 512533 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU112690 other upstream 148696 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 277410 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1071633 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2058575 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2288627 7785226 ~ 7785723 (+) True G97766
TU113122 other downstream 159734 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 219725 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1596979 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 2085975 12160641 ~ 12162845 (+) False G100178

Expression Profile