RNA id: TU113048


Basic Information

Item Value
RNA id TU113048
length 217
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G99343
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10166038 ~ 10166254 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTGTTGGACAAAATGGCGGATTCGGCGTTATGATTGGTCAGATCGCCTGTCAATCAAACTCCTGGCGAAGGGTCAATTGCCATAAATCTTTTCACATACATGATTCTCACAACTCTTAACCAATTAATTGACATGATTTTTCCAGTTTGGAAAAAGCTTACTGAGGAAAAAAAAAAACAAAAAAAAAAACATATTTCATATAAATGTATAAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113042 lncRNA upstream 6295 10159526 ~ 10159743 (+) True G99337
TU112978 lncRNA upstream 9163 10156652 ~ 10156875 (+) True G99273
TU113035 lncRNA upstream 35995 10129828 ~ 10130043 (+) True G99330
TU113018 lncRNA upstream 48864 10116940 ~ 10117174 (+) True G99313
TU113016 lncRNA upstream 50904 10114859 ~ 10115134 (+) True G99311
TU113051 lncRNA downstream 1791 10168045 ~ 10168310 (+) True G99346
TU113026 lncRNA downstream 9924 10176178 ~ 10177001 (+) True G99321
TU113030 lncRNA downstream 10900 10177154 ~ 10177388 (+) True G99325
TU113029 lncRNA downstream 11590 10177844 ~ 10178160 (+) True G99324
TU113054 lncRNA downstream 12852 10179106 ~ 10179418 (+) True G99349
CI01000016_10042324_10051398.mRNA mRNA upstream 113671 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 165317 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 210710 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 263156 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 279805 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 167623 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 169004 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 254321 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 342210 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 420945 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU112690 other upstream 240384 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 369098 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1163321 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2150263 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2380315 7785226 ~ 7785723 (+) True G97766
TU113122 other downstream 68146 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 128137 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1505391 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1994387 12160641 ~ 12162845 (+) False G100178

Expression Profile