RNA id: TU113054


Basic Information

Item Value
RNA id TU113054
length 313
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G99349
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10179106 ~ 10179418 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATAAGAGTAATACATCTTTTGAATCTGTGAAGAGTCTACTTTTATTTGTGTGCACTCACAATAACAACAAAACATTGTGCTTTTGTAAAATAATGACAGCAAACAGGGTGCACTCTCTGCTGTCTCTCTCTGTCAACTTGAGCGTGCCAAAAAACAGAAAGAACCAAAATTCCATGTAAACTTGCCTCACAGACATGAAAAACATATCTATAGAAAGCAAAATGTTAAACTTTTAAATGAACCAATTGAAATTGAAAACAAATTTTCTTTGATTATGTAATCCAAATGAAGCGTCCACTGTGGAGATGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113029 lncRNA upstream 946 10177844 ~ 10178160 (+) True G99324
TU113030 lncRNA upstream 1718 10177154 ~ 10177388 (+) True G99325
TU113026 lncRNA upstream 2105 10176178 ~ 10177001 (+) True G99321
TU113051 lncRNA upstream 10796 10168045 ~ 10168310 (+) True G99346
TU113048 lncRNA upstream 12852 10166038 ~ 10166254 (+) True G99343
TU113055 lncRNA downstream 275 10179693 ~ 10179930 (+) True G99350
TU113060 lncRNA downstream 15418 10194836 ~ 10195285 (+) True G99355
TU113094 lncRNA downstream 19851 10199269 ~ 10199486 (+) True G99382
TU113097 lncRNA downstream 26156 10205574 ~ 10205992 (+) True G99385
TU113099 lncRNA downstream 30913 10210331 ~ 10210570 (+) True G99387
CI01000016_10042324_10051398.mRNA mRNA upstream 126739 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 178385 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 223778 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 276224 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 292873 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 154459 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 155840 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 241157 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 329046 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 407781 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU112690 other upstream 253452 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 382166 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1176389 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2163331 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2393383 7785226 ~ 7785723 (+) True G97766
TU113122 other downstream 54982 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 114973 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1492227 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1981223 12160641 ~ 12162845 (+) False G100178

Expression Profile