RNA id: TU113099


Basic Information

Item Value
RNA id TU113099
length 240
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G99387
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10210331 ~ 10210570 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATAGCTTGCCAAAGCAAACTTTCTGGAAAAGTTCGCTCCGGCTGGTAACGCCTTCGAAATACCATTAGGCTGAGGTGATTACGTAATAGGTAGGTGTGCTCTGAGGTTCCGCCTTCTTTGACATGGATATCTTCTCCAGTTCATTTCCTCTTTTCAGTTCATCAAGGTCAAATGTCCATGAGTAAAATCATAAACACTGGAGAGCTGCTTTATAGTAGAAATTGAAGTGTAATTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113097 lncRNA upstream 4339 10205574 ~ 10205992 (+) True G99385
TU113094 lncRNA upstream 10845 10199269 ~ 10199486 (+) True G99382
TU113060 lncRNA upstream 15046 10194836 ~ 10195285 (+) True G99355
TU113055 lncRNA upstream 30401 10179693 ~ 10179930 (+) True G99350
TU113054 lncRNA upstream 30913 10179106 ~ 10179418 (+) True G99349
TU113102 lncRNA downstream 4043 10214613 ~ 10214878 (+) True G99390
TU113103 lncRNA downstream 4785 10215355 ~ 10215610 (+) True G99391
TU113104 lncRNA downstream 6164 10216734 ~ 10216985 (+) True G99392
TU113105 lncRNA downstream 6453 10217023 ~ 10217257 (+) True G99393
TU113106 lncRNA downstream 6746 10217316 ~ 10217534 (+) True G99394
CI01000016_10042324_10051398.mRNA mRNA upstream 157964 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 209610 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 255003 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 307449 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 324098 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 123307 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 124688 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 210005 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 297894 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 376629 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU112690 other upstream 284677 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 413391 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1207614 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2194556 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2424608 7785226 ~ 7785723 (+) True G97766
TU113122 other downstream 23830 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 83821 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1461075 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1950071 12160641 ~ 12162845 (+) False G100178

Expression Profile