RNA id: TU113105


Basic Information

Item Value
RNA id TU113105
length 235
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G99393
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10217023 ~ 10217257 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTGCAAGTGAATGGCGCCTTGTGGTGCCACCCCAAAGAGGAACAAAATCAATCTCACGGACCTTCTGCTTGTCTGTTCCCTGCTGGTGGAATCACCTCTCTAGCTCAATCCGAGCAGCTGAGTCTTTAGCCATTTTCAAAAAACTGCTAAAGACACATCTTTTTCGTCAACACTTGACCCAGTAATATTAGCACTTACTTTTTCTTTTTCTACTCCCCCACCCTATTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113104 lncRNA upstream 38 10216734 ~ 10216985 (+) True G99392
TU113103 lncRNA upstream 1413 10215355 ~ 10215610 (+) True G99391
TU113102 lncRNA upstream 2145 10214613 ~ 10214878 (+) True G99390
TU113099 lncRNA upstream 6453 10210331 ~ 10210570 (+) True G99387
TU113097 lncRNA upstream 11031 10205574 ~ 10205992 (+) True G99385
TU113106 lncRNA downstream 59 10217316 ~ 10217534 (+) True G99394
TU113107 lncRNA downstream 4047 10221304 ~ 10222253 (+) True G99395
TU113109 lncRNA downstream 5679 10222936 ~ 10223173 (+) True G99397
TU113110 lncRNA downstream 5989 10223246 ~ 10223455 (+) True G99398
TU113111 lncRNA downstream 6627 10223884 ~ 10224151 (+) True G99399
CI01000016_10042324_10051398.mRNA mRNA upstream 164656 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 216302 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 261695 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 314141 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 330790 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 116620 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 118001 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 203318 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 291207 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 369942 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU112690 other upstream 291369 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 420083 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1214306 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2201248 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2431300 7785226 ~ 7785723 (+) True G97766
TU113122 other downstream 17143 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 77134 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1454388 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1943384 12160641 ~ 12162845 (+) False G100178

Expression Profile