RNA id: TU113109


Basic Information

Item Value
RNA id TU113109
length 238
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G99397
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10222936 ~ 10223173 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTCAATGTGTCTGCTCTGACCAGAGAGGGGCTGGACACAACGTGTCCGGTTTGACATGTCTGAGGCGGGCTACAGCACTCATCTGACAGGGCTGCATGCAGCAGACGCTACACTGCTAATTAGAGAAGTGTTTATGAGAACAGCGAGGAAACGCTCTCACTCTGGGAGATGGAACGCTGGGTCAGTTCTGACACACTCCATCAGTGCGGCACTGCTTGGACTCAGAGGTAGAAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113107 lncRNA upstream 683 10221304 ~ 10222253 (+) True G99395
TU113106 lncRNA upstream 5402 10217316 ~ 10217534 (+) True G99394
TU113105 lncRNA upstream 5679 10217023 ~ 10217257 (+) True G99393
TU113104 lncRNA upstream 5951 10216734 ~ 10216985 (+) True G99392
TU113103 lncRNA upstream 7326 10215355 ~ 10215610 (+) True G99391
TU113110 lncRNA downstream 73 10223246 ~ 10223455 (+) True G99398
TU113111 lncRNA downstream 711 10223884 ~ 10224151 (+) True G99399
TU113114 lncRNA downstream 4149 10227322 ~ 10227547 (+) True G99402
TU113115 lncRNA downstream 4587 10227760 ~ 10227967 (+) True G99403
TU113118 lncRNA downstream 7941 10231114 ~ 10231370 (+) True G99406
CI01000016_10042324_10051398.mRNA mRNA upstream 170569 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 222215 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 267608 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 320054 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 336703 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 110704 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 112085 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 197402 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 285291 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 364026 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU112690 other upstream 297282 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 425996 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1220219 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2207161 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2437213 7785226 ~ 7785723 (+) True G97766
TU113122 other downstream 11227 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 71218 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1448472 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1937468 12160641 ~ 12162845 (+) False G100178

Expression Profile