RNA id: TU113115


Basic Information

Item Value
RNA id TU113115
length 208
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G99403
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10227760 ~ 10227967 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAAGCATTAATTAAATTTGCCAAAATCTGTAATAATCAAGCATGCAAGGAGATTTTGAGATGTTTAAAACATTATGAATGTTGGAAAGAAATTTTGTGGAACTTTTGCAGTCATAACATAACAGGAAAGTCACTGAAACTTAAATCCTAAATCCTTAAAATCCTTCAACTAAAACGGTTACCGTCCAGTGGAGCAACAGACTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113114 lncRNA upstream 213 10227322 ~ 10227547 (+) True G99402
TU113111 lncRNA upstream 3609 10223884 ~ 10224151 (+) True G99399
TU113110 lncRNA upstream 4305 10223246 ~ 10223455 (+) True G99398
TU113109 lncRNA upstream 4587 10222936 ~ 10223173 (+) True G99397
TU113107 lncRNA upstream 5507 10221304 ~ 10222253 (+) True G99395
TU113118 lncRNA downstream 3147 10231114 ~ 10231370 (+) True G99406
TU113120 lncRNA downstream 4075 10232042 ~ 10232308 (+) True G99408
TU113121 lncRNA downstream 4477 10232444 ~ 10232755 (+) True G99409
TU113124 lncRNA downstream 9603 10237570 ~ 10237785 (+) True G99412
TU113128 lncRNA downstream 12822 10240789 ~ 10241233 (+) True G99416
CI01000016_10042324_10051398.mRNA mRNA upstream 175393 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 227039 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 272432 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 324878 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 341527 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 105910 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 107291 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 192608 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 280497 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 359232 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU112690 other upstream 302106 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 430820 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1225043 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2211985 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2442037 7785226 ~ 7785723 (+) True G97766
TU113122 other downstream 6433 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 66424 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1443678 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1932674 12160641 ~ 12162845 (+) False G100178

Expression Profile