RNA id: TU113118


Basic Information

Item Value
RNA id TU113118
length 257
lncRNA type intronic
GC content 0.32
exon number 1
gene id G99406
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10231114 ~ 10231370 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGACTGGGGGTAACTATAACGCTCTAAATTTCTTTAGCACACTCCACACTCAGTGACGCTCAGTAAATTTTTAGTAAAGTACTGTAGTTTCTCAGCATGATGAAAAAAATAAGCAGGAGATTTTAACAGGAGACCTGATACCACAGGTCACGAAAAAAAAAAAAAAAAAAAAAATCAGACATAACTACCTATCTTATGAACATATGAAGATACCAAAATTTTCAATAAATTTCAGTATGTTCATCAAAAACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113115 lncRNA upstream 3147 10227760 ~ 10227967 (+) True G99403
TU113114 lncRNA upstream 3567 10227322 ~ 10227547 (+) True G99402
TU113111 lncRNA upstream 6963 10223884 ~ 10224151 (+) True G99399
TU113110 lncRNA upstream 7659 10223246 ~ 10223455 (+) True G99398
TU113109 lncRNA upstream 7941 10222936 ~ 10223173 (+) True G99397
TU113120 lncRNA downstream 672 10232042 ~ 10232308 (+) True G99408
TU113121 lncRNA downstream 1074 10232444 ~ 10232755 (+) True G99409
TU113124 lncRNA downstream 6200 10237570 ~ 10237785 (+) True G99412
TU113128 lncRNA downstream 9419 10240789 ~ 10241233 (+) True G99416
TU113129 lncRNA downstream 10361 10241731 ~ 10242025 (+) True G99417
CI01000016_10042324_10051398.mRNA mRNA upstream 178747 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 230393 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 275786 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 328232 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 344881 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 102507 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 103888 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 189205 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 277094 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 355829 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU112690 other upstream 305460 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 434174 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1228397 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2215339 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2445391 7785226 ~ 7785723 (+) True G97766
TU113122 other downstream 3030 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 63021 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1440275 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1929271 12160641 ~ 12162845 (+) False G100178

Expression Profile