RNA id: TU113124


Basic Information

Item Value
RNA id TU113124
length 216
lncRNA type intronic
GC content 0.39
exon number 1
gene id G99412
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10237570 ~ 10237785 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCGGTCTCCTGATTTAAATTTCCTAAAAACGATGATAGCAAGAAGAGGTGGATTAATTTTGTGAAGTGAACCTTGATGGAGAGCTGAGGATCACCACCAACACCTGCCTCTGCAGTGAAGATTTTACATTGGATAGTATTACAAACTTTTATCGGAGACAACTGGGATTCACTGATAATCCACTGTTATTGGTAAATGGGGATGAACAGACTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113121 lncRNA upstream 4815 10232444 ~ 10232755 (+) True G99409
TU113120 lncRNA upstream 5262 10232042 ~ 10232308 (+) True G99408
TU113118 lncRNA upstream 6200 10231114 ~ 10231370 (+) True G99406
TU113115 lncRNA upstream 9603 10227760 ~ 10227967 (+) True G99403
TU113114 lncRNA upstream 10023 10227322 ~ 10227547 (+) True G99402
TU113128 lncRNA downstream 3004 10240789 ~ 10241233 (+) True G99416
TU113129 lncRNA downstream 3946 10241731 ~ 10242025 (+) True G99417
TU113130 lncRNA downstream 4552 10242337 ~ 10242595 (+) True G99418
TU113136 lncRNA downstream 21560 10259345 ~ 10259566 (+) True G99424
TU113141 lncRNA downstream 27715 10265500 ~ 10265702 (+) True G99429
CI01000016_10042324_10051398.mRNA mRNA upstream 185203 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 236849 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 282242 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 334688 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 351337 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 96092 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 97473 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 182790 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 270679 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 349414 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU113122 other upstream 719 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 311916 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 440630 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1234853 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2221795 8014363 ~ 8015775 (+) True G97824
TU113168 other downstream 56606 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1433860 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1922856 12160641 ~ 12162845 (+) False G100178

Expression Profile