RNA id: TU113129


Basic Information

Item Value
RNA id TU113129
length 295
lncRNA type intronic
GC content 0.33
exon number 1
gene id G99417
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10241731 ~ 10242025 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGTTCTGGGGTCCATGAAAGTTTTGTGAAAATTATCAAAAATGCAGGTGCAGGTTGGCAACTTTTTTGAAAAACACTGGCAGGGAAAGAGTTAATAACAGCGTTATTAAAGATTGTGGTTTGATGAATGGACATTTTACATAAAGTATGACTATGACGATTTAATTATATAAACTAGGAGGTTTTCTATGAGGTTGCACTTAGCATAAATTAGTTACAATCTGATGCTGTCACTATAATGTAAACCATATATCAGAGTAGCAATTCCTGGTTTATTTCTAAGTGAACATAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113128 lncRNA upstream 498 10240789 ~ 10241233 (+) True G99416
TU113124 lncRNA upstream 3946 10237570 ~ 10237785 (+) True G99412
TU113121 lncRNA upstream 8976 10232444 ~ 10232755 (+) True G99409
TU113120 lncRNA upstream 9423 10232042 ~ 10232308 (+) True G99408
TU113118 lncRNA upstream 10361 10231114 ~ 10231370 (+) True G99406
TU113130 lncRNA downstream 312 10242337 ~ 10242595 (+) True G99418
TU113136 lncRNA downstream 17320 10259345 ~ 10259566 (+) True G99424
TU113141 lncRNA downstream 23475 10265500 ~ 10265702 (+) True G99429
TU113145 lncRNA downstream 26589 10268614 ~ 10268889 (+) True G99433
TU113146 lncRNA downstream 27148 10269173 ~ 10269385 (+) True G99434
CI01000016_10042324_10051398.mRNA mRNA upstream 189364 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 241010 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 286403 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 338849 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 355498 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 91852 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 93233 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 178550 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 266439 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 345174 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU113122 other upstream 4880 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 316077 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 444791 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1239014 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2225956 8014363 ~ 8015775 (+) True G97824
TU113168 other downstream 52366 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1429620 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1918616 12160641 ~ 12162845 (+) False G100178

Expression Profile