RNA id: TU113130


Basic Information

Item Value
RNA id TU113130
length 259
lncRNA type intronic
GC content 0.47
exon number 1
gene id G99418
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10242337 ~ 10242595 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCATCTATGCCATGAGTTCTGCCTGACTAACCTGATTTGATGCACACAGGACTTATTCCGATATATGTTTATATATAAACTTGCAGCTGCCTCCCAAACCCACACAATGTCAGACTTACAGGGGCTACGAGGTGAGGACAGCTTCTCACCAGAGATCTGTCCTCCAATCTCTGCCTCATTCTCTCTCACACACCTCTGCTGAGCTTCCCAGCTCGATTCTTGCCTCGGGCCATGCTCAAGCCAAACTTTACTGAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113129 lncRNA upstream 312 10241731 ~ 10242025 (+) True G99417
TU113128 lncRNA upstream 1104 10240789 ~ 10241233 (+) True G99416
TU113124 lncRNA upstream 4552 10237570 ~ 10237785 (+) True G99412
TU113121 lncRNA upstream 9582 10232444 ~ 10232755 (+) True G99409
TU113120 lncRNA upstream 10029 10232042 ~ 10232308 (+) True G99408
TU113136 lncRNA downstream 16750 10259345 ~ 10259566 (+) True G99424
TU113141 lncRNA downstream 22905 10265500 ~ 10265702 (+) True G99429
TU113145 lncRNA downstream 26019 10268614 ~ 10268889 (+) True G99433
TU113146 lncRNA downstream 26578 10269173 ~ 10269385 (+) True G99434
TU113148 lncRNA downstream 28161 10270756 ~ 10271129 (+) True G99436
CI01000016_10042324_10051398.mRNA mRNA upstream 189970 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 241616 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 287009 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 339455 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 356104 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 91282 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 92663 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 177980 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 265869 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 344604 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU113122 other upstream 5486 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 316683 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 445397 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1239620 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2226562 8014363 ~ 8015775 (+) True G97824
TU113168 other downstream 51796 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1429050 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1918046 12160641 ~ 12162845 (+) False G100178

Expression Profile