RNA id: TU114122


Basic Information

Item Value
RNA id TU114122
length 324
lncRNA type intronic
GC content 0.45
exon number 1
gene id G100295
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10262881 ~ 10263204 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATAATGATACGTTCTAGAGCAGGAATTACTTTGCATGCGTGGTGTGCTGAATAAGACAGCTTAGCCTTGTTTGTTTCTTCCTGTGTAACAGGAATCATTGCTGCACGTCTCTCTCTGCCAAGACTCATCAAGCACAGCCACCAACATCTGTTCCCTGCAAAGTCATCACTTATGAGACTTTAACAGTCACGGGGCAAAGCGTGCTACATAGGGCATTTGCATAGCACCCTACTGAGAGAACAACTGCAGAGAGAGAAGCATATATACTCACTCATCCGAGCACTCAGAGAGAAGGAAGATAATAGAATGCTAAAGGCCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114117 lncRNA downstream 14583 10248085 ~ 10248298 (-) True G100290
TU114116 lncRNA downstream 15267 10247391 ~ 10247614 (-) True G100289
TU114114 lncRNA downstream 21416 10241186 ~ 10241465 (-) True G100287
TU114113 lncRNA downstream 22356 10240301 ~ 10240525 (-) True G100286
TU114110 lncRNA downstream 30735 10231662 ~ 10232146 (-) True G100283
TU114123 lncRNA upstream 3247 10266451 ~ 10266669 (-) True G100296
TU114125 lncRNA upstream 4682 10267886 ~ 10268172 (-) True G100298
TU114128 lncRNA upstream 23775 10286979 ~ 10287195 (-) True G100301
TU114129 lncRNA upstream 24047 10287251 ~ 10287491 (-) True G100302
TU114153 lncRNA upstream 70679 10333883 ~ 10352130 (-) True G100324
CI01000016_10089136_10135299.mRNA mRNA downstream 127582 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10025722_10027148.mRNA mRNA downstream 235622 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_09959197_09962175.mRNA mRNA downstream 299696 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_09739013_09746676.mRNA mRNA downstream 516205 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 601684 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_10386099_10386648.mRNA mRNA upstream 122621 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10443526_10488009.mRNA mRNA upstream 179641 10442845 ~ 10488186 (-) True CI01000016_10443526_10488009
CI01000016_10571262_10572444.mRNA mRNA upstream 307501 10570705 ~ 10573868 (-) True CI01000016_10571262_10572444
CI01000016_10600154_10633808.mRNA mRNA upstream 335998 10599202 ~ 10633808 (-) True CI01000016_10600154_10633808
CI01000016_10637748_10650217.mRNA mRNA upstream 374435 10637639 ~ 10650217 (-) True CI01000016_10637748_10650217
TU114011 other downstream 210492 10051168 ~ 10052389 (-) True G100190
TU112845 other downstream 447926 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 750453 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 750519 9511357 ~ 9511415 (-) False G98896

Expression Profile