RNA id: TU114125


Basic Information

Item Value
RNA id TU114125
length 287
lncRNA type intronic
GC content 0.37
exon number 1
gene id G100298
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10267886 ~ 10268172 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGATTGCAATTCTTTGCAAAAATCTGGGCAAAAGTTGTGTAGTGTATTCCAGCTTTAATTGCACATTTTTCTTGAGAAATGTATTATAAAAGAGTCACAATATGGATTTTGAGTTGTAATGCGTGTTGTTTGTGGGAGCTGAAAGCTTTGCAATAAGATGATCCACATAGGTAAGTTTTACCCAGTATCCATCATCTAAAAGAAACTTGGGCTAATTCATCGTCATGGCAACGATAAAAGCTTCTATAAATAGAAATGTCGCAGGGGCTTGATGCAGGAGGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114123 lncRNA downstream 1217 10266451 ~ 10266669 (-) True G100296
TU114122 lncRNA downstream 4682 10262881 ~ 10263204 (-) True G100295
TU114117 lncRNA downstream 19588 10248085 ~ 10248298 (-) True G100290
TU114116 lncRNA downstream 20272 10247391 ~ 10247614 (-) True G100289
TU114114 lncRNA downstream 26421 10241186 ~ 10241465 (-) True G100287
TU114128 lncRNA upstream 18807 10286979 ~ 10287195 (-) True G100301
TU114129 lncRNA upstream 19079 10287251 ~ 10287491 (-) True G100302
TU114153 lncRNA upstream 65711 10333883 ~ 10352130 (-) True G100324
TU114218 lncRNA upstream 207079 10475251 ~ 10476135 (-) True G100378
TU114221 lncRNA upstream 208810 10476982 ~ 10478852 (-) True G100379
CI01000016_10089136_10135299.mRNA mRNA downstream 132587 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10025722_10027148.mRNA mRNA downstream 240627 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_09959197_09962175.mRNA mRNA downstream 304701 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_09739013_09746676.mRNA mRNA downstream 521210 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 606689 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_10386099_10386648.mRNA mRNA upstream 117653 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10443526_10488009.mRNA mRNA upstream 174673 10442845 ~ 10488186 (-) True CI01000016_10443526_10488009
CI01000016_10571262_10572444.mRNA mRNA upstream 302533 10570705 ~ 10573868 (-) True CI01000016_10571262_10572444
CI01000016_10600154_10633808.mRNA mRNA upstream 331030 10599202 ~ 10633808 (-) True CI01000016_10600154_10633808
CI01000016_10637748_10650217.mRNA mRNA upstream 369467 10637639 ~ 10650217 (-) True CI01000016_10637748_10650217
TU114011 other downstream 215497 10051168 ~ 10052389 (-) True G100190
TU112845 other downstream 452931 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 755458 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 755524 9511357 ~ 9511415 (-) False G98896

Expression Profile