RNA id: TU113146


Basic Information

Item Value
RNA id TU113146
length 213
lncRNA type intronic
GC content 0.42
exon number 1
gene id G99434
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10269173 ~ 10269385 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAATAGTCACCCCAGTTTGGCTTTCTACCTCTTTAGATAACTGCAGTGAACTTGCATGCCGATTTTCTTTAACCCTTCTCATCAGAAGACGCTCCTGTCGAGGTGTTAACTTCCATGGACGACCTGGACATCTCTGTGAGATTGTTGCAGTTCCATCTTTTTTAAATTGTTGTACCACTTTTGCTACAGTATTCTGACTGATAAGTAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113145 lncRNA upstream 284 10268614 ~ 10268889 (+) True G99433
TU113141 lncRNA upstream 3471 10265500 ~ 10265702 (+) True G99429
TU113136 lncRNA upstream 9607 10259345 ~ 10259566 (+) True G99424
TU113130 lncRNA upstream 26578 10242337 ~ 10242595 (+) True G99418
TU113129 lncRNA upstream 27148 10241731 ~ 10242025 (+) True G99417
TU113148 lncRNA downstream 1371 10270756 ~ 10271129 (+) True G99436
TU113154 lncRNA downstream 7318 10276703 ~ 10277009 (+) True G99442
TU113161 lncRNA downstream 12978 10282363 ~ 10282607 (+) True G99449
TU113163 lncRNA downstream 17181 10286566 ~ 10286821 (+) True G99451
TU113165 lncRNA downstream 21682 10291067 ~ 10291292 (+) True G99453
CI01000016_10042324_10051398.mRNA mRNA upstream 216806 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 268452 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 313845 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 366291 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 382940 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 64492 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 65873 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 151190 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 239079 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 317814 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU113122 other upstream 32322 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 343519 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 472233 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1266456 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2253398 8014363 ~ 8015775 (+) True G97824
TU113168 other downstream 25006 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1402260 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1891256 12160641 ~ 12162845 (+) False G100178

Expression Profile