RNA id: TU113154


Basic Information

Item Value
RNA id TU113154
length 307
lncRNA type intronic
GC content 0.28
exon number 1
gene id G99442
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10276703 ~ 10277009 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATAACAAACACATTATGTAATATAATTTTATTTCAAGCGAATGAGGAAAATAAAGTGGGTTTAATCCAAGCATCTTTAAAAGTTTTTAGAATTATAGAATAATCTGGCATCTTTCTGAAGGCACTCTGGCTGCGCTTGAGATGTTGAATGCTCTGTTGATCATAAAACATGTTAATTACACAAATAAAATGTTTAGCGTACATTTATTGAACAGTGATTGATTAGCCTATATGTAGTTATTTACTGTAAACTTTATTATTAAGCGAAGAAAACATTTTGTTGAAATATCCACAAGATATAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113148 lncRNA upstream 5574 10270756 ~ 10271129 (+) True G99436
TU113146 lncRNA upstream 7318 10269173 ~ 10269385 (+) True G99434
TU113145 lncRNA upstream 7814 10268614 ~ 10268889 (+) True G99433
TU113141 lncRNA upstream 11001 10265500 ~ 10265702 (+) True G99429
TU113136 lncRNA upstream 17137 10259345 ~ 10259566 (+) True G99424
TU113161 lncRNA downstream 5354 10282363 ~ 10282607 (+) True G99449
TU113163 lncRNA downstream 9557 10286566 ~ 10286821 (+) True G99451
TU113165 lncRNA downstream 14058 10291067 ~ 10291292 (+) True G99453
TU113166 lncRNA downstream 15291 10292300 ~ 10292509 (+) True G99454
TU113167 lncRNA downstream 22350 10299359 ~ 10299612 (+) True G99455
CI01000016_10042324_10051398.mRNA mRNA upstream 224336 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 275982 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 321375 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 373821 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 390470 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 56868 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 58249 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 143566 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 231455 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 310190 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU113122 other upstream 39852 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 351049 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 479763 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1273986 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2260928 8014363 ~ 8015775 (+) True G97824
TU113168 other downstream 17382 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1394636 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1883632 12160641 ~ 12162845 (+) False G100178

Expression Profile