RNA id: TU113163


Basic Information

Item Value
RNA id TU113163
length 256
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G99451
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10286566 ~ 10286821 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTGTACGTGCTTGGCGACCACACACGCACAGAGCATAGGCATAAAATCCACAGGCCCTTTGCGGGCACATAGAGTGTGTGTGGCAGGACGTGCTGACTCTCATGTCTGTTGCATTACCTAATGTGAAGGACTTGCTGAGGTTTGGGCTGGCTGGGTCAGCAGGTGCTTTCTGTGCTTCATCTGCTGTCTGAGAAGTCACAGGGGCCAAATGCAGGCTGAAAAACAAACACACACACACACACACACACACACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113161 lncRNA upstream 3959 10282363 ~ 10282607 (+) True G99449
TU113154 lncRNA upstream 9557 10276703 ~ 10277009 (+) True G99442
TU113148 lncRNA upstream 15437 10270756 ~ 10271129 (+) True G99436
TU113146 lncRNA upstream 17181 10269173 ~ 10269385 (+) True G99434
TU113145 lncRNA upstream 17677 10268614 ~ 10268889 (+) True G99433
TU113165 lncRNA downstream 4246 10291067 ~ 10291292 (+) True G99453
TU113166 lncRNA downstream 5479 10292300 ~ 10292509 (+) True G99454
TU113167 lncRNA downstream 12538 10299359 ~ 10299612 (+) True G99455
TU113173 lncRNA downstream 99017 10385838 ~ 10386651 (+) True G99461
TU113198 lncRNA downstream 187160 10473981 ~ 10474743 (+) True G99484
CI01000016_10042324_10051398.mRNA mRNA upstream 234199 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 285845 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 331238 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 383684 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 400333 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10333877_10334229.mRNA mRNA downstream 47056 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 48437 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 133754 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 221643 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 300378 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
TU113122 other upstream 49715 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 360912 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 489626 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1283849 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 2270791 8014363 ~ 8015775 (+) True G97824
TU113168 other downstream 7570 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1384824 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1873820 12160641 ~ 12162845 (+) False G100178

Expression Profile