RNA id: TU113198


Basic Information

Item Value
RNA id TU113198
length 306
lncRNA type intronic
GC content 0.46
exon number 2
gene id G99484
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10473981 ~ 10474743 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTCTTCAGTGTTATCAATGTCTGAAGCCAAAGAAGATATCAGCAGCTGCTCGAAGATCTCGCCTTTGGAGAAGACTGATTTTATACTCAAAAAAATCTTTATTCTGATGAAGCAGCTGATGAACACCTTCATCCATCATGTCCCTCACTGCTGCTCTTCTCAGTGGGGACATCGTTGATCCAGAGGATGAGGAAGATGATGATGATGGACCCCTGAACCCCACAACCTTGAACCAAGAGTGGGAGAAGATGTGCAGGACAATCTGGCTGCTGCTGTGTCTGCTGCAAACATTCATGTGCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113173 lncRNA upstream 87330 10385838 ~ 10386651 (+) True G99461
TU113167 lncRNA upstream 174369 10299359 ~ 10299612 (+) True G99455
TU113166 lncRNA upstream 181472 10292300 ~ 10292509 (+) True G99454
TU113165 lncRNA upstream 182689 10291067 ~ 10291292 (+) True G99453
TU113163 lncRNA upstream 187160 10286566 ~ 10286821 (+) True G99451
TU113074 lncRNA downstream 41731 10516474 ~ 10522566 (+) True G99362
TU113077 lncRNA downstream 95959 10570702 ~ 10572556 (+) True G99365
TU113091 lncRNA downstream 119292 10594035 ~ 10594264 (+) True G99379
TU113213 lncRNA downstream 130225 10604968 ~ 10606304 (+) True G99498
TU113076 lncRNA downstream 154720 10629463 ~ 10632125 (+) True G99364
CI01000016_10421936_10422623.mRNA mRNA upstream 49465 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10339126_10370881.mRNA mRNA upstream 101330 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10333877_10334229.mRNA mRNA upstream 139635 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10042324_10051398.mRNA mRNA upstream 421614 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 473260 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_10508464_10510408.mRNA mRNA downstream 33721 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 112456 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
CI01000016_10676271_10682495.mRNA mRNA downstream 201344 10676087 ~ 10682839 (+) True CI01000016_10676271_10682495
CI01000016_10748252_10749230.mRNA mRNA downstream 273509 10748252 ~ 10749343 (+) True CI01000016_10748252_10749230
CI01000016_10756608_10758149.mRNA mRNA downstream 279650 10754393 ~ 10758201 (+) True CI01000016_10756608_10758149
TU113168 other upstream 175077 10294391 ~ 10298904 (+) True G99456
TU113122 other upstream 237130 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 548327 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 677041 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1471264 8996098 ~ 9002717 (+) True G98288
TU113731 other downstream 1196902 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1685898 12160641 ~ 12162845 (+) False G100178

Expression Profile