RNA id: TU114187


Basic Information

Item Value
RNA id TU114187
length 923
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G100351
representative False

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10529416 ~ 10551424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATATTAAATTAGATTTATTTATATACAATTTGTAGAGAAAATCATGCATATATTTGAAAAGTGAAGATATGACATTTTCTGTCATTTTCAGTGACTTGGACCCAGAAACAAATCTTTTTACATTGTCATTACAAAGTAAATAGGAAAGTCTCAGCTTTCTAACATTATTATAATGTTTCTACTCCAAACCTTTGTCGGGTCATAAATGGTTGTTTTTGAGAAAATTGACTGAAAAAGATCAGGGGGAGAGAGCACTACAGCGCAGTCATTTGAAATGACTAGTGCGATTTGTCACAACACATTAAACAGTGTCTTACTGTTTACTGTCTTACTGTCTATTAACATTTGCTGTTCAAATTACATTGCAACACTGAGAGTTTGAAAGCCAAGACTTTGTTTTATTCAAAATAACAAAAACATGACAATTCTTGTTTGTTTTTGCAAAAGACTTTAAGTAAAGAGAAGGGGTGATCGTGGGGAGAGATCTCCATACAACAGATTTATTGACCTGCGAGACCTGACCAGTAATCCTTTCTCCAATTATGGAAATCCAATGGAACAGATCCAATCTACTGAGACTTTCTTTTTCATCAAAAATTACACAGAACAGTCAAAAGTCCCATTTTTGGACTTCTGGAAATGATGCCGCTGCAATTAATTTAAATGAATTATTTTTCTTTTGCTCAAAGCACTACTCAATAATGGTGTATGGCTGATTACGTTTTTTTTTTTTTTTTTTTTATTTTTTTATTTTTTTTTTTTCATCCAGTGCATAAAAACGTCTCGGGTTACGTTTGTAAGCCTGGTTCCCTGAATAGGAAACGAGACACTGCGTTGAATCGCATTGGGATCACCTCTGCGTGATTACGTCTTGAAGCACTCGTGAAATCGAACCAATAGTGTGACAGGACGTCAGAGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114221 lncRNA downstream 50564 10476982 ~ 10478852 (-) True G100379
TU114218 lncRNA downstream 53281 10475251 ~ 10476135 (-) True G100378
TU114153 lncRNA downstream 177286 10333883 ~ 10352130 (-) True G100324
TU114129 lncRNA downstream 241925 10287251 ~ 10287491 (-) True G100302
TU114128 lncRNA downstream 242221 10286979 ~ 10287195 (-) True G100301
TU114256 lncRNA upstream 101319 10652743 ~ 10715678 (-) True G100413
TU114191 lncRNA upstream 114005 10665429 ~ 10681706 (-) True G100352
TU114183 lncRNA upstream 185124 10736548 ~ 10736879 (-) False G100350
TU114184 lncRNA upstream 185163 10736587 ~ 10736879 (-) True G100350
TU114178 lncRNA upstream 185529 10736953 ~ 10737372 (-) True G100346
CI01000016_10443526_10488009.mRNA mRNA downstream 41230 10442845 ~ 10488186 (-) True CI01000016_10443526_10488009
CI01000016_10386099_10386648.mRNA mRNA downstream 141934 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10228314_10299064.mRNA mRNA downstream 230352 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10089136_10135299.mRNA mRNA downstream 394117 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10025722_10027148.mRNA mRNA downstream 502157 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_10571262_10572444.mRNA mRNA upstream 19281 10570705 ~ 10573868 (-) True CI01000016_10571262_10572444
CI01000016_10600154_10633808.mRNA mRNA upstream 47778 10599202 ~ 10633808 (-) True CI01000016_10600154_10633808
CI01000016_10637748_10650217.mRNA mRNA upstream 86215 10637639 ~ 10650217 (-) True CI01000016_10637748_10650217
CI01000016_10740961_10745890.mRNA mRNA upstream 188522 10739946 ~ 10745890 (-) True CI01000016_10740961_10745890
CI01000016_10799559_10842613.mRNA mRNA upstream 247761 10799185 ~ 10843409 (-) True CI01000016_10799559_10842613
TU114011 other downstream 477027 10051168 ~ 10052389 (-) True G100190
TU112845 other downstream 714461 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 1016988 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 1017054 9511357 ~ 9511415 (-) False G98896

Expression Profile