RNA id: TU113077



Basic Information


Item Value
RNA id TU113077
length 1257
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G99365
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10570702 ~ 10572556 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTTTTATTACACACGCCTCTATATCCCAGCCATGCCTAATGACGTCATTCACATGAGGCCGTGACTTAAAGTGAAACCACACATAATGCTACATCCCCCTTCTTCCAGAGGGAGACAATCTAGTGAGAAAATAGCAACGTTAAATACAATCAACAACAAGACATCTGATAACAAAGAATAAGTGCAATAAGGGGAATGTTTCCGTAGCAAAATTACATAATGCTTGAACAAGAATGATAATGAACTAGATTTGCATAACACATATCAATCAGGTCAAAACATAGTCTTTGTAATGTTGGTTAGGGCGGCTGACTCTTCCAGAACGAGTCACCAGTGAACACTTGTTGTCTGTGTCAGTGCCACTTTAGGGGACTGAGGCTGTTACATGGGCTATTTGGTTGCTCAAAACCATGTGCTGTTTGCATCCTGACAGTTTGCCCCAGCTTCAGAGCAGGGAGCTGATGTGCATTTCTGTCATAATAGTCTTTCCCCCTCATTCTTTGTTTTGTGAGTGTTTCTTTTACGTTAGTTTGGACAACAGGGTGAAGCATGGGCTTCGTCACTGGGAGGAAGGTCCTTGTTTGCCTGGAAAGCAGTCTTTGTGCAGGGGAAGGTAAGGCATCCCGGGGAAGATTCCGAAGATGAAGAAGGGCAGCATGGATGTCAGTATTGTCATGGTAGCATTTTTCCAGAAGGTGCATGGCAGATCTGACTGCCCGCTCAGCCAGCCCATTGGACTGAGGATAGCAAGGGCTGCTGCGAATGTGCTTAAAGTCCCATGTGTGCGCAAAATCTGAAAACTCGTTGCACACAAACCAAGCAGCATAGTCATGACTTCCAGCAGGTCATCAGTGAGTTGTGGCTCAGATGTGGAAAGGTGGGCCCAGGACAATGCATCAGCCACAAACAGCTTCTTACCACATTTGAAGATCACATCTAGGTGGTAGCGGTGCAGTTTCATCATCATACCCTGTAAGCGGGGTGAGTCTGTGTGGTGTGGCTTCTTTAATATGGTTATCAAGGGCTGATGATCAATTTCTACAGTGACTGGCCGTCCGTAGATAAAATCATGGAATTTTTTTGTCGCAAACACGAGTGCCAGCATTTCTTTTTCAATCTGAGCATAACGGGATTCAGTAGGCATGAGAGCCCTTGATGCGAATGCCACAGACCGTCCTCGCTGAAGGCATACTGCACCCAGGCCATGTTGGGAGGTCTTGTGAAAGCCTTGTGATCTTCCTCATCCGCATAGACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113074 lncRNA upstream 48136 10516474 ~ 10522566 (+) True G99362
TU113198 lncRNA upstream 95959 10473981 ~ 10474743 (+) True G99484
TU113173 lncRNA upstream 184051 10385838 ~ 10386651 (+) True G99461
TU113167 lncRNA upstream 271090 10299359 ~ 10299612 (+) True G99455
TU113166 lncRNA upstream 278193 10292300 ~ 10292509 (+) True G99454
TU113091 lncRNA downstream 21479 10594035 ~ 10594264 (+) True G99379
TU113213 lncRNA downstream 32412 10604968 ~ 10606304 (+) True G99498
TU113076 lncRNA downstream 56907 10629463 ~ 10632125 (+) True G99364
TU113280 lncRNA downstream 163640 10736196 ~ 10736496 (+) True G99554
TU113278 lncRNA downstream 164031 10736587 ~ 10736879 (+) True G99552
CI01000016_10508464_10510408.mRNA mRNA upstream 59870 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10421936_10422623.mRNA mRNA upstream 146186 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10339126_10370881.mRNA mRNA upstream 198051 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10333877_10334229.mRNA mRNA upstream 236356 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10042324_10051398.mRNA mRNA upstream 518335 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_10587199_10588775.mRNA mRNA downstream 14643 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
CI01000016_10676271_10682495.mRNA mRNA downstream 103531 10676087 ~ 10682839 (+) True CI01000016_10676271_10682495
CI01000016_10748252_10749230.mRNA mRNA downstream 175696 10748252 ~ 10749343 (+) True CI01000016_10748252_10749230
CI01000016_10756608_10758149.mRNA mRNA downstream 181837 10754393 ~ 10758201 (+) True CI01000016_10756608_10758149
CI01000016_10760640_10783664.mRNA mRNA downstream 188084 10760640 ~ 10783859 (+) True CI01000016_10760640_10783664
TU113168 other upstream 271798 10294391 ~ 10298904 (+) True G99456
TU113122 other upstream 333851 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 645048 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 773762 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1567985 8996098 ~ 9002717 (+) True G98288
TU113731 other downstream 1099089 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1588085 12160641 ~ 12162845 (+) False G100178

Expression Profile