RNA id: TU113280


Basic Information

Item Value
RNA id TU113280
length 301
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G99554
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10736196 ~ 10736496 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAAAATTAACAACAGACATCTGAGTTGACACAGATTTGTCAAACCTGGATAAATATTAAATCAAACAAATGTTATTTACAAAATCTTTATGACATCGATTTAATTCAAAACAATAATAATGATACTGCAATAACTGTTCCTTACAAAAAATGCCTATTTAGCACTGAATGCTTTTACAGAATATTGACTTTGTCCTGAGACATGTTGCATTTATTTTGGCTGAAGACTTAAATGGTAAGTTCACCCAAAAATGAATATTATGTCATTTATTACTCACCCTCATGTCGCTCCATATCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113076 lncRNA upstream 104071 10629463 ~ 10632125 (+) True G99364
TU113213 lncRNA upstream 129892 10604968 ~ 10606304 (+) True G99498
TU113091 lncRNA upstream 141932 10594035 ~ 10594264 (+) True G99379
TU113077 lncRNA upstream 163640 10570702 ~ 10572556 (+) True G99365
TU113074 lncRNA upstream 213630 10516474 ~ 10522566 (+) True G99362
TU113278 lncRNA downstream 91 10736587 ~ 10736879 (+) True G99552
TU113283 lncRNA downstream 95774 10832270 ~ 10836628 (+) True G99557
TU113333 lncRNA downstream 114561 10851057 ~ 10851280 (+) True G99607
TU113362 lncRNA downstream 154262 10890758 ~ 10891261 (+) True G99636
TU113361 lncRNA downstream 156862 10893358 ~ 10893733 (+) True G99635
CI01000016_10676271_10682495.mRNA mRNA upstream 53357 10676087 ~ 10682839 (+) True CI01000016_10676271_10682495
CI01000016_10587199_10588775.mRNA mRNA upstream 147421 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
CI01000016_10508464_10510408.mRNA mRNA upstream 225364 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10421936_10422623.mRNA mRNA upstream 311680 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10339126_10370881.mRNA mRNA upstream 363545 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10748252_10749230.mRNA mRNA downstream 11756 10748252 ~ 10749343 (+) True CI01000016_10748252_10749230
CI01000016_10756608_10758149.mRNA mRNA downstream 17897 10754393 ~ 10758201 (+) True CI01000016_10756608_10758149
CI01000016_10760640_10783664.mRNA mRNA downstream 24144 10760640 ~ 10783859 (+) True CI01000016_10760640_10783664
CI01000016_10865834_10867561.mRNA mRNA downstream 128853 10865349 ~ 10867648 (+) True CI01000016_10865834_10867561
CI01000016_10881609_10887779.mRNA mRNA downstream 144965 10881461 ~ 10887897 (+) True CI01000016_10881609_10887779
TU113168 other upstream 437292 10294391 ~ 10298904 (+) True G99456
TU113122 other upstream 499345 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 810542 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 939256 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1733479 8996098 ~ 9002717 (+) True G98288
TU113731 other downstream 935149 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1424145 12160641 ~ 12162845 (+) False G100178

Expression Profile