RNA id: TU113423


Basic Information

Item Value
RNA id TU113423
length 238
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G99694
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10963460 ~ 10963697 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGAATTAGCATCTACTCTTGGCAAGTCAAATCCTTTTTCAGCTTCATTTGGTGGTCATGGCCCACTTTCGACTGCTTGGAAGCGAAAAACGTACTACAAAAAACATTTAGATATTGTAGAACCTATAGAATATGAGCTCGACTCCCAAAACGGAAAATCTTTTCAATACATCTCTGTACTAAAATCTTTACAGCAGATCCTAAGTTGTCAAACATTTTTGGAAAAAGCAATCAACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113420 lncRNA upstream 6011 10957228 ~ 10957449 (+) True G99691
TU113410 lncRNA upstream 15971 10947270 ~ 10947489 (+) True G99681
TU113409 lncRNA upstream 16303 10946928 ~ 10947157 (+) True G99680
TU113408 lncRNA upstream 16618 10946634 ~ 10946842 (+) True G99679
TU113361 lncRNA upstream 69727 10893358 ~ 10893733 (+) True G99635
TU113426 lncRNA downstream 2460 10966157 ~ 10966466 (+) True G99697
TU113427 lncRNA downstream 3244 10966941 ~ 10967210 (+) True G99698
TU113430 lncRNA downstream 5510 10969207 ~ 10969416 (+) True CI01000016_10967556_10968779
TU113431 lncRNA downstream 6329 10970026 ~ 10970265 (+) True G99702
TU113438 lncRNA downstream 17663 10981360 ~ 10981583 (+) True G99709
CI01000016_10881609_10887779.mRNA mRNA upstream 75563 10881461 ~ 10887897 (+) True CI01000016_10881609_10887779
CI01000016_10865834_10867561.mRNA mRNA upstream 95812 10865349 ~ 10867648 (+) True CI01000016_10865834_10867561
CI01000016_10760640_10783664.mRNA mRNA upstream 179601 10760640 ~ 10783859 (+) True CI01000016_10760640_10783664
CI01000016_10756608_10758149.mRNA mRNA upstream 205259 10754393 ~ 10758201 (+) True CI01000016_10756608_10758149
CI01000016_10748252_10749230.mRNA mRNA upstream 214117 10748252 ~ 10749343 (+) True CI01000016_10748252_10749230
CI01000016_10967556_10968779.mRNA mRNA downstream 3859 10967556 ~ 10969315 (+) False CI01000016_10967556_10968779
CI01000016_11277549_11278592.mRNA mRNA downstream 312858 11276555 ~ 11278855 (+) True CI01000016_11277549_11278592
CI01000016_11298638_11300240.mRNA mRNA downstream 333973 11297670 ~ 11300506 (+) True CI01000016_11298638_11300240
CI01000016_11311430_11313782.mRNA mRNA downstream 347184 11310881 ~ 11314080 (+) True CI01000016_11311430_11313782
CI01000016_11330944_11334103.mRNA mRNA downstream 366516 11330213 ~ 11334466 (+) False CI01000016_11330944_11334103
TU113168 other upstream 664556 10294391 ~ 10298904 (+) True G99456
TU113122 other upstream 726609 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 1037806 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 1166520 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1960743 8996098 ~ 9002717 (+) True G98288
TU113731 other downstream 707948 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1196944 12160641 ~ 12162845 (+) False G100178

Expression Profile