RNA id: TU113809


Basic Information

Item Value
RNA id TU113809
length 203
lncRNA type intronic
GC content 0.44
exon number 1
gene id G100010
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 11618788 ~ 11618990 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACATTTGTCCCTAAAAGAAATAATGGGCCTGTAGTTATTTACAACTAACCTATTGTGCAGGTCATCTTGTGCAGATTGACTGCACGCTCATCTTGAGAATACAAGTCCTACCAGGTTGGATCAGGGATGGGGAAACTCCGGTACTGGAGGGCCACTGTCCTGCAGAGTTTAAGTCCATCCCTAATGAAACACACCTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113670 lncRNA upstream 223189 11394825 ~ 11395599 (+) True G99884
TU113643 lncRNA upstream 239671 11373878 ~ 11379117 (+) True G99862
TU113645 lncRNA upstream 258554 11357022 ~ 11360234 (+) True G99864
TU113659 lncRNA upstream 269521 11349055 ~ 11349267 (+) True G99873
TU113646 lncRNA upstream 273785 11327295 ~ 11327387 (+) True G99865
TU113845 lncRNA downstream 71105 11690095 ~ 11693166 (+) False G100046
TU113846 lncRNA downstream 71105 11690095 ~ 11696461 (+) True G100046
TU113770 lncRNA downstream 278996 11897986 ~ 11900048 (+) True G99971
TU113957 lncRNA downstream 371179 11990169 ~ 11991067 (+) True G100149
TU113970 lncRNA downstream 523995 12142985 ~ 12143342 (+) True G100162
CI01000016_11499086_11499455.mRNA mRNA upstream 119179 11498878 ~ 11499609 (+) True CI01000016_11499086_11499455
CI01000016_11344848_11345696.mRNA mRNA upstream 272919 11344452 ~ 11345869 (+) False CI01000016_11344848_11345696
CI01000016_11330944_11334103.mRNA mRNA upstream 284322 11330213 ~ 11334466 (+) False CI01000016_11330944_11334103
CI01000016_11311430_11313782.mRNA mRNA upstream 304708 11310881 ~ 11314080 (+) True CI01000016_11311430_11313782
CI01000016_11298638_11300240.mRNA mRNA upstream 318282 11297670 ~ 11300506 (+) True CI01000016_11298638_11300240
CI01000016_11949149_11958553.mRNA mRNA downstream 330159 11949149 ~ 11958718 (+) True CI01000016_11949149_11958553
CI01000016_12006986_12008107.mRNA mRNA downstream 387370 12006360 ~ 12009146 (+) True CI01000016_12006986_12008107
CI01000016_12012874_12083297.mRNA mRNA downstream 393884 12012874 ~ 12083297 (+) True CI01000016_12012874_12083297
CI01000016_12087864_12111652.mRNA mRNA downstream 468874 12087864 ~ 12111772 (+) True CI01000016_12087864_12111652
CI01000016_12124439_12128957.mRNA mRNA downstream 504595 12123585 ~ 12129766 (+) True CI01000016_12124439_12128957
TU113168 other upstream 1319884 10294391 ~ 10298904 (+) True G99456
TU113122 other upstream 1381937 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 1693134 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 1821848 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 2616071 8996098 ~ 9002717 (+) True G98288
TU113731 other downstream 52655 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 541651 12160641 ~ 12162845 (+) False G100178

Expression Profile