RNA id: TU114533


Basic Information

Item Value
RNA id TU114533
length 240
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G100670
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 11901106 ~ 11901345 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAAAACCACCTGTGAAAAACCTCGGACAGAGCAACCAGGGATTCTTCAATGCATGGTCACAAGAATGCATCCTGGTGCATTCTGCTAATCACAGTCAGAGGGAGGAATATGTCTATACCTTTGTTATATAGGCACATTATTAACTAAGGGTATTTTATGAGCTATAAAGTTAGTACACCACAAATCTCCCTCATGAGATACAAACACTGTGGAATATTTATACTGCAGGACCCTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114532 lncRNA downstream 245 11900642 ~ 11900861 (-) True G100669
TU114341 lncRNA downstream 87004 11748189 ~ 11814102 (-) True G100490
TU114338 lncRNA downstream 115550 11762108 ~ 11785556 (-) False G100488
TU114339 lncRNA downstream 115550 11762108 ~ 11785556 (-) True G100488
TU114483 lncRNA downstream 270948 11629855 ~ 11630158 (-) True G100625
TU114547 lncRNA upstream 45876 11947221 ~ 11947828 (-) True G100679
TU114569 lncRNA upstream 80731 11982076 ~ 11982307 (-) True G100701
TU114580 lncRNA upstream 98355 11999700 ~ 12000027 (-) True G100712
TU114593 lncRNA upstream 259410 12160755 ~ 12161232 (-) True G100722
CI01000016_11876020_11896223.mRNA mRNA downstream 4883 11875492 ~ 11896223 (-) True CI01000016_11876020_11896223
CI01000016_11866962_11874982.mRNA mRNA downstream 26124 11865984 ~ 11874982 (-) True CI01000016_11866962_11874982
CI01000016_11670870_11794943.mRNA mRNA downstream 106023 11670818 ~ 11795083 (-) True CI01000016_11670870_11794943
CI01000016_11353238_11464979.mRNA mRNA downstream 436127 11352733 ~ 11464979 (-) True CI01000016_11353238_11464979
CI01000016_11167265_11226409.mRNA mRNA downstream 674697 11167265 ~ 11226409 (-) True CI01000016_11167265_11226409
CI01000016_11908468_11923802.mRNA mRNA upstream 6382 11907727 ~ 11925765 (-) True CI01000016_11908468_11923802
CI01000016_11938043_11946368.mRNA mRNA upstream 36102 11937447 ~ 11946561 (-) True CI01000016_11938043_11946368
CI01000016_12116368_12123187.mRNA mRNA upstream 214957 12116302 ~ 12123298 (-) True CI01000016_12116368_12123187
CI01000016_12137876_12146233.mRNA mRNA upstream 236429 12137774 ~ 12147884 (-) True CI01000016_12137876_12146233
TU114011 other downstream 1848717 10051168 ~ 10052389 (-) True G100190
TU112845 other downstream 2086151 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 2388678 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 2388744 9511357 ~ 9511415 (-) False G98896

Expression Profile