RNA id: TU113972


Basic Information

Item Value
RNA id TU113972
length 298
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G100164
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 12148518 ~ 12148815 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTACATTATAGAATTTCTTCAAGCATTTTATGAACTGAGGCAAAATTAATTGAGACTGATTCTCTGCTCTTTTTGCTAGTACTTGCAAATGATCTTTCCAGGTTCTGAGGACCTCAAGAGAAGTTTTTCTTTAAAACTAAGCAAATTTCTTTGTTTCCTCACTGAGACAAATTTTTATACAGTATATCCATGCCGGATCATGTTAAATATGAACATGTGTTGTACATTGTGGACTGTGATCTTTGGGAGTTCTAAAAATGAATTTCCCTGTGATACCTTTTTCTTTCCAAAAACACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113970 lncRNA upstream 5176 12142985 ~ 12143342 (+) True G100162
TU113957 lncRNA upstream 157451 11990169 ~ 11991067 (+) True G100149
TU113770 lncRNA upstream 248470 11897986 ~ 11900048 (+) True G99971
TU113846 lncRNA upstream 452057 11690095 ~ 11696461 (+) True G100046
TU113845 lncRNA upstream 455352 11690095 ~ 11693166 (+) False G100046
TU113981 lncRNA downstream 8205 12157020 ~ 12157594 (+) True G100173
TU113984 lncRNA downstream 10067 12158882 ~ 12159090 (+) True G100176
TU113987 lncRNA downstream 11826 12160641 ~ 12161066 (+) False G100178
TU113993 lncRNA downstream 11826 12160641 ~ 12161162 (+) False G100178
TU113988 lncRNA downstream 11897 12160712 ~ 12161066 (+) False G100178
CI01000016_12124439_12128957.mRNA mRNA upstream 18752 12123585 ~ 12129766 (+) True CI01000016_12124439_12128957
CI01000016_12087864_12111652.mRNA mRNA upstream 36746 12087864 ~ 12111772 (+) True CI01000016_12087864_12111652
CI01000016_12012874_12083297.mRNA mRNA upstream 65221 12012874 ~ 12083297 (+) True CI01000016_12012874_12083297
CI01000016_12006986_12008107.mRNA mRNA upstream 139372 12006360 ~ 12009146 (+) True CI01000016_12006986_12008107
CI01000016_11949149_11958553.mRNA mRNA upstream 189800 11949149 ~ 11958718 (+) True CI01000016_11949149_11958553
TU113731 other upstream 475645 11671645 ~ 11672873 (+) True G99940
TU113168 other upstream 1849614 10294391 ~ 10298904 (+) True G99456
TU113122 other upstream 1911667 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 2222864 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 2351578 9795631 ~ 9795684 (+) True G99016
TU113986 other downstream 11826 12160641 ~ 12162845 (+) False G100178

Expression Profile