RNA id: TU113986


Basic Information

Item Value
RNA id TU113986
length 2205
RNA type TUCP
GC content 0.43
exon number 1
gene id G100178
representative False

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 12160641 ~ 12162845 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGAAAAATCAAACAAGACTTTATTGAACTACTTCTATGATTAAAAGAAACTAAGGCTAAACACACACACACACATACATTCACGGAGTTGAGAGAGTGAGTTATGGAGAAAGTCCCAACTTCAGTACTAATAATTAAAATCACAACCTGAGAAAAATCACAAAAGCAGAGCTTTGGTTTGATTCCTTCTGTTTAAAGGATTTTCACCAGTTTCCAGCAAGAGAGAGAGAATTTTGCTTGTACCTGCGTTCGATTTGACAACTGAGGTAGTCGGGTTGTTCCGTGGCTAGCATCAAGCTGAAAGGGGAATCCCGACTTGGATTGGCTGTCTTTGAGGTGACGTCTCTCGGGGAAGCCCTGCGTTGGGTTGCGCGGGAGCTTTGAAAGGAGGTCGCCGGCTGGTGATGTGCTGGAAGCTCTTCTGAGAGTCTGTTGCTTGGGTGGCTCTCGGCTTTGGAGAATTTTGGTCAAGAAGTTCAACGGGGTGTTTCAGAGTTCTGGATGCGAACTGTTTGATGTAAAACGAGCCCCTGGTCAAACCACAAGCGAAGACTGTTGGGTGAAAATATCAGCCACGACTCTTGGATGAAAAATAGTCAGCGACTGTTAGATGGAAAAGCAGCAGCGACCGTTAGATGGAAAAAGCCGCTGCGGTTTTTAGATGTAAAAATCAGCTATGGTGAAAGTATTAGCTCCGAGCTGTTTTGGACAGCATAGTTTTAAAGGAGAAGGTTTGGCTCCATCCTCCGACGCGATTCTCCAATGAGACGTTGCTACGGAGCTTAGACACGCCCCGTACTGTTTCTCCTTTGTTCATTGATTGCATCATATGACGTTCGTGGAACATTATCCTGTTTTGATTAGTAACTTTATAAAGTTTCCTAATATCTCCCTGATACAGAAATTCAATGTTTCATGCACCCAGAATTAAAGAGAATAATAAATCCTGTAATTCAAAGTCAAACATGACACATCTCTTGCACACATATTACTAACCTAACCTAATAAATCAATGATTACAATGATGCATTTGAGGAAAACAAACATATAATGCATCGAATAGACATGTTAGTAATCACATCATAGTGTGTATGATTCTGAATATAGTTAACCCTTTTGGGATCCTTTAGAATGTTCAGTTCATAGTCTGTAAGAAAGAAGATAGTTGAAAAGTTGAAGTCCCAAGTGACCAGGTCAGATGCGATCACTCAGTACAAAGGAGGTATTTGTATTGGACCCATTGTGCTTTAGGTCCGTTGATTAATGTTTCCTGTCCCATTTCGTTGATACAAAAGGTCTTATGAGAGGATCGATGAAATTTTATGTGATTAGGAAGGCTTAAGAACAGATATTCTCTGTTCTTAAGTCACGTTACCAGTTCTCTTAACGCTGATTAAGTTGGGAAACAAATGAACAACTGTTGCATCGTTCGTTGTGTGTTTGTTGCCTGAGGGTTTAAGAATTAAGTCAGGGAGGACAATTCCTTGTTCATTGTTCACAATTAGTATTCAGTTAAAGTTGTTTGGTAACCCCTGTTAAACGAGGTCCTACATGCCAAAACAGCAATCCTGAGTCTGAAGAGTTCCTTGAGCTTTTGAGTTGTATTTCTCGTTGGTCTGGTCCTCACCAGCCTGCTAAGCTCAGCACGGTGAAGCTCTATCAAGCAGTTACCTTACTTCCCAGATGTGAACACCTGGTCTGGGGAAAACTTCCTGCTAACGTTAATGTTTCCCCAGGAAGCACAGTCATTGTTGAACCCACTACTTCACGTTCAGCGCCCCGTCATGTTTTTGTGGGACGCGTAGTGACTACTGTGTGGGGTGATCGATGGGTGTCGATGAAGATTTTGAACCCCACACAGTCTCCAATAACTCTTCGTCGTAATGCTAAGCTAGCTGATGTGTCTCCTTGTTTGGCAGTGGAGGATGTTACTGTCACACAAAGTCTGTGCAGATCTCACGATGTTCCTGATGCGGCTTTCCCCAAGCCCATTCCATCTGTTGATCCTGTGCGGTTATTGCACGAGTACGGTTTGGAAGACATCGATATCGAAGCGTGTGAAGTCTCCAAGTTATGGAAGGAGGAGTTGGCAAGTGTTATCGTGTCTTATCGTGATGTTTTCTCCAGAGACCAACTTGATTGTGGAGAGGCGAAAGACTTTGAACACAGGATACATTTGTGTGATGAACGTCCATTCCGTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113984 lncRNA upstream 1551 12158882 ~ 12159090 (+) True G100176
TU113981 lncRNA upstream 3047 12157020 ~ 12157594 (+) True G100173
TU113972 lncRNA upstream 11826 12148518 ~ 12148815 (+) True G100164
TU113970 lncRNA upstream 17299 12142985 ~ 12143342 (+) True G100162
TU113957 lncRNA upstream 169574 11990169 ~ 11991067 (+) True G100149
CI01000016_12124439_12128957.mRNA mRNA upstream 30875 12123585 ~ 12129766 (+) True CI01000016_12124439_12128957
CI01000016_12087864_12111652.mRNA mRNA upstream 48869 12087864 ~ 12111772 (+) True CI01000016_12087864_12111652
CI01000016_12012874_12083297.mRNA mRNA upstream 77344 12012874 ~ 12083297 (+) True CI01000016_12012874_12083297
CI01000016_12006986_12008107.mRNA mRNA upstream 151495 12006360 ~ 12009146 (+) True CI01000016_12006986_12008107
CI01000016_11949149_11958553.mRNA mRNA upstream 201923 11949149 ~ 11958718 (+) True CI01000016_11949149_11958553
TU113731 other upstream 487768 11671645 ~ 11672873 (+) True G99940
TU113168 other upstream 1861737 10294391 ~ 10298904 (+) True G99456
TU113122 other upstream 1923790 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 2234987 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 2363701 9795631 ~ 9795684 (+) True G99016

Expression Profile