RNA id: TU113991


Basic Information

Item Value
RNA id TU113991
length 451
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G100178
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 12160641 ~ 12162845 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACATACATTCACGGAGTTGAGAGAGTGAGTTATGGAGAAAGTCCCAACTTCAGTACTAATAATTAAAATCACAACCTGAGAAAAATCACAAAAGCAGAGCTTTGGTTTGATTCCTTCTGTTTAAAGGATTTTCACCAGTTTCCAGCAAGAGAGAGAGAATTTTGCTTGTACCTGCGTTCGATTTGACAACTGAGGTAGTCGGGTTGTTCCGTGGCTAGCATCAAGCTGAAAGGGGAATCCCGACTTGGATTGGCTGTCTTTGAGGTGACGTCTCTCGGGGAAGCCCTGCGTTGGGTTGCGCGGGAGCTTTGAAAGGAGGTCGCCGGCTGGTGATGTGCTGGAAGCTCTTCTGAGAGTCTGTTGCTTGGGTGGCTCTCGGCTTTGGAGAATTTTGGTCAAGAAGTTCAACGGGGTGTTTCAGAGTTCTGGATGCGAACTGTTTGATGTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113984 lncRNA upstream 1622 12158882 ~ 12159090 (+) True G100176
TU113981 lncRNA upstream 3118 12157020 ~ 12157594 (+) True G100173
TU113972 lncRNA upstream 11897 12148518 ~ 12148815 (+) True G100164
TU113970 lncRNA upstream 17370 12142985 ~ 12143342 (+) True G100162
TU113957 lncRNA upstream 169645 11990169 ~ 11991067 (+) True G100149
CI01000016_12124439_12128957.mRNA mRNA upstream 30946 12123585 ~ 12129766 (+) True CI01000016_12124439_12128957
CI01000016_12087864_12111652.mRNA mRNA upstream 48940 12087864 ~ 12111772 (+) True CI01000016_12087864_12111652
CI01000016_12012874_12083297.mRNA mRNA upstream 77415 12012874 ~ 12083297 (+) True CI01000016_12012874_12083297
CI01000016_12006986_12008107.mRNA mRNA upstream 151566 12006360 ~ 12009146 (+) True CI01000016_12006986_12008107
CI01000016_11949149_11958553.mRNA mRNA upstream 201994 11949149 ~ 11958718 (+) True CI01000016_11949149_11958553
TU113731 other upstream 487839 11671645 ~ 11672873 (+) True G99940
TU113168 other upstream 1861808 10294391 ~ 10298904 (+) True G99456
TU113122 other upstream 1923861 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 2235058 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 2363772 9795631 ~ 9795684 (+) True G99016

Expression Profile