RNA id: TU114593


Basic Information

Item Value
RNA id TU114593
length 478
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G100722
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 12160755 ~ 12161232 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCATCCAAGAGTCGTGGCTGATATTTTCACCCAACAGTCTTCGCTTGTGGTTTGACCAGGGGCTCGTTTTACATCAAACAGTTCGCATCCAGAACTCTGAAACACCCCGTTGAACTTCTTGACCAAAATTCTCCAAAGCCGAGAGCCACCCAAGCAACAGACTCTCAGAAGAGCTTCCAGCACATCACCAGCCGGCGACCTCCTTTCAAAGCTCCCGCGCAACCCAACGCAGGGCTTCCCCGAGAGACGTCACCTCAAAGACAGCCAATCCAAGTCGGGATTCCCCTTTCAGCTTGATGCTAGCCACGGAACAACCCGACTACCTCAGTTGTCAAATCGAACGCAGGTACAAGCAAAATTCTCTCTCTCTTGCTGGAAACTGGTGAAAATCCTTTAAACAGAAGGAATCAAACCAAAGCTCTGCTTTTGTGATTTTTCTCAGGTTGTGATTTTAATTATTAGTACTGAAGTTGGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114580 lncRNA downstream 160728 11999700 ~ 12000027 (-) True G100712
TU114569 lncRNA downstream 178448 11982076 ~ 11982307 (-) True G100701
TU114547 lncRNA downstream 212927 11947221 ~ 11947828 (-) True G100679
TU114533 lncRNA downstream 259410 11901106 ~ 11901345 (-) True G100670
TU114532 lncRNA downstream 259894 11900642 ~ 11900861 (-) True G100669
CI01000016_12137876_12146233.mRNA mRNA downstream 12871 12137774 ~ 12147884 (-) True CI01000016_12137876_12146233
CI01000016_12116368_12123187.mRNA mRNA downstream 37457 12116302 ~ 12123298 (-) True CI01000016_12116368_12123187
CI01000016_11938043_11946368.mRNA mRNA downstream 214194 11937447 ~ 11946561 (-) True CI01000016_11938043_11946368
CI01000016_11908468_11923802.mRNA mRNA downstream 234990 11907727 ~ 11925765 (-) True CI01000016_11908468_11923802
CI01000016_11876020_11896223.mRNA mRNA downstream 264532 11875492 ~ 11896223 (-) True CI01000016_11876020_11896223
TU114011 other downstream 2108366 10051168 ~ 10052389 (-) True G100190
TU112845 other downstream 2345800 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 2648327 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 2648393 9511357 ~ 9511415 (-) False G98896

Expression Profile