RNA id: CI01000017_00542622_00545974.mRNA


Basic Information

Item Value
RNA id CI01000017_00542622_00545974.mRNA
length 1080
RNA type mRNA
GC content 0.38
exon number 4
gene id CI01000017_00542622_00545974
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 542622 ~ 546304 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTATCAGAGTGTTTATGACTGAGTTGGTGGTAAATGTGACCGCAGCCCAAAGAAACGGTCATCCCGCTGTGGACGATCACCAGAGACACGGAATGAGGGTCAAGCAAGGTAGGACTCTGAAGATTCTTGGTTTAAGTGTCCATAAGATCCCGTCCAGCTCAGATGTGAGGATCCTGTGGACCGGATCTCATTCCGTAGAGCAGAAGAAACAGAAGCAGTCAAAAAAATCTTCGGAGAAACTTACTGTGCAGAAAATGCCTTTTCCAAACATCAATGCCAACATTTTTCTTCAGAGCGCTGCTCCTGTGAGCTTTTTGATCATGGGTTTTGAAGTGATTTTCAAGATGAAATTTTCATGCCTATGCATTATTGTGATGAACCAATTTCTAGCACTCCTCATCTTAACTGTGCCTGCTGTCTTTGCTTCGGTTATGATCTCACTATTTTTAAGTTTTATAATATCTGAAAGCAGTGGAAGTTCTGAAGCACAAGGCAACAATGAACAATTTAATCGTATGATTAGTTTAATTCCACCTGCATTGTGGATCTGTATATTTTTCATCGATGGTGATTATTGTGCGTGTGGATTCACATATTGGGATGGACAGTATGTCTGTGATACAAGTCTTCATCCCAGTTGTTTCAGCTGGTGTAAACCGGAAGGAACAAATGGGACAGGAAAATATAACTACACACTATGGGTGAATAATATAACAAAGGTTTACCCAGAGCCAAAATCATGGATCTAAAGACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATACAGGTTTAATTTTAATTAATTAACAGGTCACTGAAATATTGAGAAATAGCAGTGAAAAAGGACTCTGAATTGATTTTTCAGTGTGGATGCAGAAAAACACAGAAGAGCCGGAGAGAGAGAAAAAATAATGTTCAGATGAGGGAGAGGAATATATGAGGAGCAGTTAGATCAGGATAAGAGAGAGGAGTAAGAATATGTGCTGGACATCGTTTTTAGAGACAGTGTTTCGAGAAGACACTGAGAGAGACGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114764 lncRNA upstream 61584 423599 ~ 481038 (+) True G100868
TU114696 lncRNA upstream 64191 417908 ~ 478431 (+) True G100807
TU114770 lncRNA upstream 91598 448507 ~ 451024 (+) True G100872
TU114760 lncRNA upstream 130509 411888 ~ 412113 (+) True G100864
TU114757 lncRNA upstream 136078 406194 ~ 406544 (+) True G100861
TU114694 lncRNA downstream 58066 604370 ~ 617022 (+) True G100805
TU114695 lncRNA downstream 144270 690574 ~ 694968 (+) True G100806
TU114857 lncRNA downstream 341851 888155 ~ 888997 (+) True G100953
TU114864 lncRNA downstream 423178 969482 ~ 969796 (+) True G100958
TU114953 lncRNA downstream 475725 1022029 ~ 1076674 (+) True G101035
CI01000017_00505305_00517048.mRNA mRNA upstream 25574 503745 ~ 517048 (+) True CI01000017_00505305_00517048
CI01000017_00384546_00386526.mRNA mRNA upstream 155791 384402 ~ 386831 (+) True CI01000017_00384546_00386526
CI01000017_00358322_00362255.mRNA mRNA upstream 179904 358006 ~ 362718 (+) True CI01000017_00358322_00362255
CI01000017_00303881_00314010.mRNA mRNA upstream 228135 303881 ~ 314487 (+) True CI01000017_00303881_00314010
CI01000017_00290432_00292826.mRNA mRNA upstream 247988 290432 ~ 294634 (+) True CI01000017_00290432_00292826
CI01000017_00558732_00563124.mRNA mRNA downstream 12428 558732 ~ 563322 (+) True CI01000017_00558732_00563124
CI01000017_00565569_00581478.mRNA mRNA downstream 18577 564881 ~ 581631 (+) True CI01000017_00565569_00581478
CI01000017_00643676_00677273.mRNA mRNA downstream 97372 643676 ~ 677299 (+) True CI01000017_00643676_00677273
CI01000017_00687984_00689034.mRNA mRNA downstream 141680 687984 ~ 689647 (+) True CI01000017_00687984_00689034
CI01000017_00722020_00762518.mRNA mRNA downstream 175716 722020 ~ 763373 (+) True CI01000017_00722020_00762518
TU114863 other downstream 380779 927083 ~ 969319 (+) True G100957

Expression Profile