Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU114864 |
| length | 315 |
| lncRNA type | sense_over |
| GC content | 0.53 |
| exon number | 1 |
| gene id | G100958 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000017 |
| NCBI id | null |
| chromosome length | 2146858 |
| location | 969482 ~ 969796 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU114857 | lncRNA | upstream | 80485 | 888155 ~ 888997 (+) | True | G100953 |
| TU114695 | lncRNA | upstream | 274514 | 690574 ~ 694968 (+) | True | G100806 |
| TU114694 | lncRNA | upstream | 352460 | 604370 ~ 617022 (+) | True | G100805 |
| TU114764 | lncRNA | upstream | 488444 | 423599 ~ 481038 (+) | True | G100868 |
| TU114696 | lncRNA | upstream | 491051 | 417908 ~ 478431 (+) | True | G100807 |
| TU114953 | lncRNA | downstream | 51365 | 1022029 ~ 1076674 (+) | True | G101035 |
| TU114951 | lncRNA | downstream | 101598 | 1072262 ~ 1074172 (+) | True | G101034 |
| TU114966 | lncRNA | downstream | 117724 | 1088388 ~ 1090576 (+) | True | G101039 |
| TU115004 | lncRNA | downstream | 177262 | 1147926 ~ 1148227 (+) | True | G101067 |
| TU115034 | lncRNA | downstream | 205492 | 1176156 ~ 1209849 (+) | True | G101091 |
| CI01000017_00722020_00762518.mRNA | mRNA | upstream | 206109 | 722020 ~ 763373 (+) | True | CI01000017_00722020_00762518 |
| CI01000017_00687984_00689034.mRNA | mRNA | upstream | 279835 | 687984 ~ 689647 (+) | True | CI01000017_00687984_00689034 |
| CI01000017_00643676_00677273.mRNA | mRNA | upstream | 292183 | 643676 ~ 677299 (+) | True | CI01000017_00643676_00677273 |
| CI01000017_00565569_00581478.mRNA | mRNA | upstream | 387851 | 564881 ~ 581631 (+) | True | CI01000017_00565569_00581478 |
| CI01000017_00558732_00563124.mRNA | mRNA | upstream | 406160 | 558732 ~ 563322 (+) | True | CI01000017_00558732_00563124 |
| CI01000017_01057310_01063843.mRNA | mRNA | downstream | 85565 | 1056229 ~ 1064326 (+) | True | CI01000017_01057310_01063843 |
| CI01000017_01067189_01070509.mRNA | mRNA | downstream | 96388 | 1067052 ~ 1070594 (+) | True | CI01000017_01067189_01070509 |
| CI01000017_01104045_01131388.mRNA | mRNA | downstream | 133381 | 1104045 ~ 1131465 (+) | True | CI01000017_01104045_01131388 |
| CI01000017_01534818_01538322.mRNA | mRNA | downstream | 563612 | 1534276 ~ 1538593 (+) | True | CI01000017_01534818_01538322 |
| CI01000017_01605157_01612590.mRNA | mRNA | downstream | 634493 | 1605157 ~ 1613008 (+) | True | CI01000017_01605157_01612590 |
| TU114863 | other | upstream | 163 | 927083 ~ 969319 (+) | True | G100957 |
