RNA id: CI01000017_01057310_01063843.mRNA


Basic Information

Item Value
RNA id CI01000017_01057310_01063843.mRNA
length 3049
RNA type mRNA
GC content 0.45
exon number 7
gene id CI01000017_01057310_01063843
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1056229 ~ 1064326 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAAAGCAGGGCTAGATTATAATACTATACCATACACTCAGGATTGGTTTCCAATAGATATTTATTTTCATTACACTAATAGCTGTTACAAAAACCAATGTTTACTGAGTCCAAGCTCTCTCTGCATATTCAAATAAAGCTTGTAGAATTATGTTAGGTTTTGCAATGTAAGTGATGCATATTTTCCTGCTATCATCTATCTTTGTTTACTGGAAAGTATTTTCTTTTAAATGGAACTGCTTGTTCTAAATTCTGCTGACTTTTCTGGCCTCATCGCAAGTGCATAACTTGGATTTCTAAACATCCTGCCGTATTAATGTCCTCTCATCTGCTGTGATGATGATGATGATGAGTGCAAAAATTGTGTTTGGAAAAACATGAGACAAAGGCAGAGCTCTCCTAGCACCTGGGTGGGTGAACCTAGGCCACGCACCAGACATCCCTGCTTGTTCAGAAGGATCAAAGGAAGTCAACGCAGGCACGCTGGATAGAAGTGCCTTCACAGATGGTGATGTTGACTCTGGAAGCCTGTGCAAAGACCTGGCTTTGCTGTAGTTTAAGAAACAGTTCTAGCACTAGGGCCATGTGGGATCTCACTAAAGAAAAAAAAAAAATGTTAGATTGAGTGAGCGAGGGAGAGGGAATGAAAGAGAGAGGGAGGGGGAGATGAGAACATTTTTTCTTTTTTCACAGACCATTGTAAGCAGTCAGAGAGGCAAATAGTGAAGTGCAGAGGAGAGCAACAGGCAGTCGTCTCCAGAGAGAGCCTGAGAGCAATGCTCAGTCCACTGACAACAACTCAACATCCGGACAGTAAGGAAGAGGGAGGTTTTTCATACTGCAGCCTGCCCTGGGGCCTCAGAAATCATCTGCCTTCCTCACAGATATGCCTGCACCACATACTGAACCAAGGACAAAGTTTCTTCACTGCATGTAGTCTGACTTGCTCATGGACACTATAAGTCCTCTATGCCATACCATCTTTAACCTGCTGGATCAAGGGATTCAATTTGGAGTTTCACTGTCCACAAGTTTCTAGGAAGTCTTGGAAGTTGTTTTCCATGCAAGTCTTGTCAATATGCTGCCTGTTGTTTTCGTGACATGGTGGGTCTGGGTGTTGCTTGGAACCGTAGGGGGACAGTCTCAATCTCAGCATCAGTCTCAGACTGAGGACTCAAACCCCTGGAGACAGATGATTCAATGGGAGAACAATGGACGAGTGTACAGTCTTCTCAACAGTGGGGCTGAATACGTCCCAGCTCGGCCTCAGGAGCGTAACAGGAACCACCGAGTGCTACTAGCGGACACTCCCAACAGTAGATCACAAGGTGGGAATGTACGGAGACAAGCACCCTCAAGAGGAAGCTCTGAGACTGTGAGAGGCCAAGCCAGACACCCCTTTGGCTTTGGCCAGGTGCCGGACAACTGGCGTCAGGGTGCAGCTGGGACAGTTTTGGACAGGTCATATGAACCCCCCTTCCGTGGAACTGGGCACTCCACGGGCACTGGTGGTGGCTTCGCCAGAGGAGGATACGGAGGGGGTGGGTACTCTGCCAGCAGTTTTGGAGGAGGAAGCTATAATGGAGGGGGTCCTGCAACTGATGAGAGGTATCGTTACTATTCCCCTTACAGTCAAACCTACCCTGTTGCTCCTGCACAACCTGCACAGCCATCAATCTCTGATGGATTGGATCACAGATACACGCACAGCCTGTACAATGAGGACTCTCGAGATAGCGGTAATGCTGCACTACCTGTCTCTAATGGTGCCTCAAGCAACACAGGCTCATCCCTCCAGCCTGCAGTGCAAAGCCCCCAATACGAACAATTTCCACCCTTTGGAAGGCCCCAGCCACAGCCTCCGTTTATACAACCACCTCCTCGCAACCCTCTCGTCTCCAATAACGCAGAAAGCCCCAACATGAATGCAGGGAGTGTTTATCGTCCTCAGCAAAGAGGGTTCTTTTCTCTGAAATCCATGACATGCAAAGCAGGAAAGCAGATATGCTGTCGCCTTTCCTTTGAAGAAATGTTAATGTCCACTGGTTTTGAGACACTGCAGGTGGTCACAATAGTCGGTTTGGTGGTTTTAGAGTGGTTTTGGGACACTTCAAGTGGTCAGAATAGTCGGTTTGGTGATTTTAGAGTGGTTTTGAACACTTTTCAGGTGGTCGGTTTGGTGGTTTTAGAGGGATTTGGACATTTTCCAGGTGGTTTGCCTGACCTGGTTCCTGACCCCAACTATGTCCAAGCCTCCACATACGTTCAAAGAGCCCATATGTACTCCTTACGCTGTGCAGCAGAGGAGAAATGTTTGGCTAGCTCCGCTTACAGTGCTGACGCCACAGACTATAGCGTCAGGGTTCTTCTGCGCTTCCCTCAGAGAGTGAAGAACCAAGGGACGGCTGATTTCATGCCCAACCGACCTCGTCACACCTGGGAGTGGCACAGCTGTCACCACTGTTCATTACATCTTGTCTACATTTGCAAACGAGATGGTGAATTTGTGAGAGTTGTTCTTTTGCTTCAAGTTAAACTCTGCTCAGATTTGTTGCACTGCTGAACACGCCCACATCACATCATCAGTGACAGCTGTCAATCATGTCAGCTCGAACTGACAAATGACAAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGGAGTAAATTACATCTTACAATATATTCACAGAGAAAACAAATATTTTATATTGTAATAATATTTCACATTTTTACTGTTTTTACTGCATCTTTGATCAAATAAATGCAACCTGGATGAGCATAAGAGAGAGAGAAATCTTACTGAAACCAGACATTTAAATGAACTTTATATTAATTTTCACAGCAAATACTGATGCATATCATTAATTGAGATTTAATTAAATTAATTTTTAAATAATGTTAATTAGAATATCATGTAATTGATTTAATTATTTTTTTAAATCAACTGACAGTGCTACTACAAATTAAACTGGAAGTGAAATATAGCACAGTTTAATTCTGCAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114864 lncRNA upstream 85565 969482 ~ 969796 (+) True G100958
TU114857 lncRNA upstream 167232 888155 ~ 888997 (+) True G100953
TU114695 lncRNA upstream 361261 690574 ~ 694968 (+) True G100806
TU114694 lncRNA upstream 439207 604370 ~ 617022 (+) True G100805
TU114764 lncRNA upstream 575191 423599 ~ 481038 (+) True G100868
TU114951 lncRNA downstream 7936 1072262 ~ 1074172 (+) True G101034
TU114966 lncRNA downstream 24062 1088388 ~ 1090576 (+) True G101039
TU115004 lncRNA downstream 83600 1147926 ~ 1148227 (+) True G101067
TU115034 lncRNA downstream 111830 1176156 ~ 1209849 (+) True G101091
TU114990 lncRNA downstream 126947 1191273 ~ 1194608 (+) True G101059
CI01000017_00969981_00977045.mRNA mRNA upstream 79001 969930 ~ 977228 (+) False CI01000017_00969981_00977045
CI01000017_00722020_00762518.mRNA mRNA upstream 292856 722020 ~ 763373 (+) True CI01000017_00722020_00762518
CI01000017_00687984_00689034.mRNA mRNA upstream 366582 687984 ~ 689647 (+) True CI01000017_00687984_00689034
CI01000017_00643676_00677273.mRNA mRNA upstream 378930 643676 ~ 677299 (+) True CI01000017_00643676_00677273
CI01000017_00565569_00581478.mRNA mRNA upstream 474598 564881 ~ 581631 (+) True CI01000017_00565569_00581478
CI01000017_01067189_01070509.mRNA mRNA downstream 2726 1067052 ~ 1070594 (+) True CI01000017_01067189_01070509
CI01000017_01104045_01131388.mRNA mRNA downstream 39719 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_01534818_01538322.mRNA mRNA downstream 469950 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_01605157_01612590.mRNA mRNA downstream 540831 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01654491_01655975.mRNA mRNA downstream 590084 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
TU114863 other upstream 86910 927083 ~ 969319 (+) True G100957

Expression Profile