RNA id: CI01000017_01534818_01538322.mRNA


Basic Information

Item Value
RNA id CI01000017_01534818_01538322.mRNA
length 2271
RNA type mRNA
GC content 0.49
exon number 2
gene id CI01000017_01534818_01538322
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1534276 ~ 1538593 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAAAAAGGGGAAAGGAATGGATGCAAAAGTGCACAGATCATTGTGAGTTATAAACACGTTTTTATTTTTTATTTTTTTTTTTTTTTTTTTTATAAACACATGTCTTGTACTGTCCCTTTAAACAATACAGCTAGAAGAATGGTTTCATGCATAAGTTTGCAACTGCAGATGTAGAAAAAGCATACATCATGTTGTTGGAAAAATGTTAATGTGCTAATTTAATTAGGGAAATGTGCATAAGGAGCGAATACAAGTCCAGTTGGGCATTTGCTAATTTTTTTGATACATGCAAGTAGGTATCACACAGTATAACCTCACAAGAAGCTGCGATGTCTGCTCAGTTTTACCTTTTCCTCAATGTGTCCAACAATCTTTGCATGTTTAATACAAACATTCTCTTAAATGTGCATGTGAGAGTTTGTGTGTGTGTTTGGGAAGGTTAAAGTGTGTTGAGAAAGACTCCCAGACAGAGGGAAGATACTCAGCATGAGAGCTTAAGCGTTTTTCTCTGTGCTCTGATTCCTGCAGGAGTGCACCCATGGAGCGACTGCTGCTGCTGTGCCTGGCTCTGTTCTCCATGCCATCCTATGCCATGCTGTGCCCCAAACGCTGCACCTGCCAGAACTTGCTGCCCTCGTACACCGTGCTGTGTGCCAAAACCGGCCTGCTATTCGTACCACCTAATATCGACCGGCAGACCGCCGAGCTGCGACTGATGGACAACTTCATCACCACCCTGCGCCACAGAGATTTCGCTAACATGAGCAGCCTCATACACCTCACGCTCTCCCGGAACACCATCAGCCAGATCCAACCGTACGCCTTCGCCGACCTGCAGGATCTGCACGCGCTGCATCTGGACGCAAACCGGCTGACGGTGCTGGACGACACCCATTTGCAGGGGTTGGTGAATCTGCGCCACCTTATACTTGCAAATAACCAGCTTCACAGCATCTCAGATGGAGCCTTTCAAGATTTCCTAGAAACTCTCGAGGATCTCGATCTTTCTTATAACAATCTGGTGGATTTGCCGTGGGACACTATAGCTATGCTGGCCAGCGTCAACACCCTTAGTTTGGACCACAATCTCGTCGACTTTGTGCCCGAAGGGATATTTTCGAATCTTCACAAACTGGCCAGACTGGACATGACGTCCAACAAGCTGAAGAAGATCCCGCCGGATCCTCTGTTCCTACGCATTCCCGTGTATGCGAAATTGAAAGGCTCGCCGCTGACCGCGCTGGTGCTCAGTTTCGGTGGGAATCCGTTGCATTGCAATTGTGAGCTGGTTTGGCTACGACGCCTCACGCGCGAGGACGATCTGGAGACGTGCGCGTCCCCGCGAGAGCTCGCAGGCAAATACTTCTGGACGATCCGCGAGGAGGAGTTCGTGTGCGAGCCGCCCATGATCACTCGGCACACGTCCAAGATGTTTGTGATGGAGGGTCAAGAGGTTAGTCTGCGATGCCGCTCTGTTGGAGACCCTGAGCCGACCGTCCACTGGGTCAGTCCGGACGGGAAGCTGATCGGCAACACCTCGCGCACCATATGTTACGATAACGGCTCTCTGGATATCTTGACGGCCACGGTGAAAGACTCCGGCGTGTTCACCTGCATAGCGTCCAATGCGGCCGGAGAGGCTACGGCTCCTGTGGAATTAGTCGTGAACCCTTCGCCGCATTACGACCCCAAACTGGAGCCTGAACCGGGACCCTCGGACATGCCGACTTCCATTAAGTCCAACAGTAGTGGTAGCGGAGGCCAGTCCCGAGCTGATCAGCGGGTCAGCGTCTCAGAAATAACCTCAAGCTCAGTGATGATCCGCTGGCCTCCTCAAAGCCACATCCCTGGAGTCCGCATGTACCAGATCCAGTACAACAGCTCCACCGATGACATCCTCATATACAGGGAGAGGCTGGCATCTGAGACTGGGGGTGTTAATGGCTTATGGCGGAATCCTATTCAGATAGCGGATGAAACATTGCAATTCCTCTGATGAATACAAATGGACCTCGATGATTGCCAGCCAACAAAGACTCAATAATATCATGAATGCAATGTATGAAATACAGCCATATTTTTGTTCTGTGCTAATCAAAGGACCCTTCCCAACGGGACCAGCTGTTTTAGGGTATCTGCTCTACATGTCAGAAAAGCTCTTGAAGGATTGTCATTAGTGCACAAACAGATTGGCTTCCACTGTAATAGTTTCAGCCTGACGCAATTCAAACTGAATTTTGCACAAGCAGACGCATTGACACCCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114911 lncRNA upstream 83380 1403460 ~ 1450896 (+) True G101002
TU114914 lncRNA upstream 106549 1419677 ~ 1427727 (+) True G101004
TU114912 lncRNA upstream 115084 1417169 ~ 1419192 (+) False G101003
TU114913 lncRNA upstream 115084 1417169 ~ 1419192 (+) True G101003
TU114909 lncRNA upstream 132925 1354231 ~ 1401351 (+) True G101000
TU115125 lncRNA downstream 46716 1585309 ~ 1585564 (+) True G101181
TU115131 lncRNA downstream 57802 1596395 ~ 1596614 (+) True G101187
TU114917 lncRNA downstream 85976 1624569 ~ 1625221 (+) True G101007
TU115143 lncRNA downstream 123967 1662560 ~ 1663555 (+) False G101199
TU115144 lncRNA downstream 123967 1662560 ~ 1666903 (+) True G101199
CI01000017_01104045_01131388.mRNA mRNA upstream 402811 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_01067189_01070509.mRNA mRNA upstream 463682 1067052 ~ 1070594 (+) True CI01000017_01067189_01070509
CI01000017_01057310_01063843.mRNA mRNA upstream 469950 1056229 ~ 1064326 (+) True CI01000017_01057310_01063843
CI01000017_00969981_00977045.mRNA mRNA upstream 557048 969930 ~ 977228 (+) False CI01000017_00969981_00977045
CI01000017_00722020_00762518.mRNA mRNA upstream 770903 722020 ~ 763373 (+) True CI01000017_00722020_00762518
CI01000017_01605157_01612590.mRNA mRNA downstream 66564 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01654491_01655975.mRNA mRNA downstream 115817 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01737674_01834279.mRNA mRNA downstream 197972 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01910759_01910947.mRNA mRNA downstream 372166 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
CI01000017_02052993_02060890.mRNA mRNA downstream 514400 2052993 ~ 2061564 (+) True CI01000017_02052993_02060890
TU114863 other upstream 564957 927083 ~ 969319 (+) True G100957

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026020 True 3104 nonsense_mediated_decay 0.49 3 NC_007129.7 49411417 ~ 49447042 (+)
bowfin (Amia calva) AMCG00013549 True 1917 mRNA 0.55 2 CM030125.1 35806801 ~ 35814022 (+)