RNA id: CI01000017_01654491_01655975.mRNA


Basic Information

Item Value
RNA id CI01000017_01654491_01655975.mRNA
length 1263
RNA type mRNA
GC content 0.42
exon number 4
gene id CI01000017_01654491_01655975
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1654410 ~ 1656182 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATAAAGGGGCATATGAGCAAAATGTGTAGAAAGCGTCTGGATTGTAAGACTTGTCACAAAAGGCACCCAACAATTCTCCATGTCGAAAGCATGCCCTCCAAAGAGCAACATACTTCCCAGACGTATAAAGAAAACGGCAGACGACAATGAGGGCAGCTTTGGTAAAGAGGTTCTTAGTACCGTACAAAGGAACTTCTATGTTGACGACTGCCTAACTTCCCTACCCAATGAGGATGCAGTCATTGCCCTGATTCGAGACTTTGCGAGTCTGTGCCACCGGCGGATTCAGACTGACGAAGTGGACAAAATCCAACAGGAACTTTGCAGAGTCATCTGTGGTTGGGATGACAAGATTCCAGATGAGTTATCGAAATACTCGAAGGAATGGTTTGAAGGCTTGGACAAACTTAACAACCTTAGCATTTGCAGATGTTTCAAACCACCAAATTATGGCAAAATAGAAACAGCCCAGCTACATCACTTTAGTGATGTGAGTGAATCAGAGTATGGTAGAGCTAGCTACCTGCGACTTACTAACATCAGTGGTGCTGTTCATGTTGCCTTTGTAATGGGCAAGGCCAGAGTTGCACCATTAAAACCTGTAACTATTCCCAGGCTTGAGTTGGCAGCTGCTGTCCTTGCAGCGCATGTTGACAGGATGCTCAAGAGAGAGATCGAAATTCCACTCATGAAATCTGTTTTCTGGACAGATAGCACATCTGTTTTGAAATACATGACACAACATGATTCAAAACATACGTTGCAAATAGAGTTTGCAAAATACACAACTTGTCTGAGAAATCCTAGTGAAAGATGGTTGAATTGTCCAGAATTCCTTTTACTGTCTGAATTAAATTGGCCTTGCTTTCCAGAGGAGAAAATGACAGTATCTTGTGATGACTCAGAGATAAAGAAAGAGGCTATGGCTTTCACTACAGTTCTGACAAGAGGGTCTGATCCTGTTAACAAATTCATTGAGCATTTCTCTTCATGGAATAGACTTAAAAGGGCTACCGCATGGAACCGGAAGTTTAAAAGGATGCTCTGGTTGTAGAGCCAAAAGCAAAAGGATGCTCACTCAATTCTTCATCTACAAAGCACTGATCCTCATTATTTGGGCAGGTCTAACGATAGAAAAGCTGAAAACTCAAAACTCAGTTTGGAGATAAAGAGTTTTCAGTGGAGGATCTTACACATGCAGAGAAGCCGTTAGTATGCTTTATCCAGCAACAGGCATTTCAACCTGAAAGTACGTCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114917 lncRNA upstream 29189 1624569 ~ 1625221 (+) True G101007
TU115131 lncRNA upstream 57796 1596395 ~ 1596614 (+) True G101187
TU115125 lncRNA upstream 68846 1585309 ~ 1585564 (+) True G101181
TU114914 lncRNA upstream 226683 1419677 ~ 1427727 (+) True G101004
TU114912 lncRNA upstream 235218 1417169 ~ 1419192 (+) False G101003
TU115143 lncRNA downstream 6378 1662560 ~ 1663555 (+) False G101199
TU115144 lncRNA downstream 6378 1662560 ~ 1666903 (+) True G101199
TU115858 lncRNA downstream 47317 1703499 ~ 1703994 (+) True G101830
TU115863 lncRNA downstream 56155 1712337 ~ 1712628 (+) True G101835
TU115867 lncRNA downstream 59482 1715664 ~ 1715957 (+) True G101839
CI01000017_01605157_01612590.mRNA mRNA upstream 41402 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01534818_01538322.mRNA mRNA upstream 115817 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_01104045_01131388.mRNA mRNA upstream 522945 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_01067189_01070509.mRNA mRNA upstream 583816 1067052 ~ 1070594 (+) True CI01000017_01067189_01070509
CI01000017_01057310_01063843.mRNA mRNA upstream 590084 1056229 ~ 1064326 (+) True CI01000017_01057310_01063843
CI01000017_01737674_01834279.mRNA mRNA downstream 80383 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01910759_01910947.mRNA mRNA downstream 254577 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
CI01000017_02052993_02060890.mRNA mRNA downstream 396811 2052993 ~ 2061564 (+) True CI01000017_02052993_02060890
CI01000017_02061927_02067003.mRNA mRNA downstream 405684 2061866 ~ 2067178 (+) True CI01000017_02061927_02067003
TU114863 other upstream 685091 927083 ~ 969319 (+) True G100957

Expression Profile