RNA id: CI01000017_02061927_02067003.mRNA


Basic Information

Item Value
RNA id CI01000017_02061927_02067003.mRNA
length 3539
RNA type mRNA
GC content 0.43
exon number 7
gene id CI01000017_02061927_02067003
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 2061866 ~ 2067178 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAAAAAAGCCAAATTCATTTCATTGGCTGTGGATGAATCCACAGACAACACAGACAATGCACAACTCATGGTCTTTGTCAGATTTTTTGATGAAGGGAGAATTTCATGTTTTGGATGTCACAAACCTCCATGGACACACAAGGGGGGACGATATTTATGAAGCAGTGACACAGATGCTTAGAGACAGAGAGATAGACCTGAAGCATGTTGTTTTCATTGCTACTGATGGAGCGCCAAGTATGATTGGGAGAGAGAGGGGATTAGTGGCACGCTTGAGAGCTCACCACCCTGACCTCATGGCATACCACTGCATAATTCACCAGATGGTTTTGTGTGCCAGCCTTGGAGAAAGGTACATGGAAGTCATGACAACAGTCATGAAACTTGTCAACTATCTGAGAGCATCCTCTGCTCTGCAACATCGTTTGTTGCGCTCATTTCTAATAGAGGTGAATGCAACATTTGATGATTTGCTCCTTCACAACCACGTCCGGTGGCTTAGTAAAGGCAAGGTACTGGAGTGGTTTTGGGCACTGCGGAAAGAGCTGGAGACTTTTCTGTTGGATCAGAAGAGTGCAAAAGCCAAACCGTTTGTGGATTTCATGAAGAATGAAGAGGAAATGGAAATTGTTGCTTTTCTAACTGACATTACTTCCCATCTCAATGACCTTAATATGAAGCTCCAGGGCAAAAACAGCACAGTGTGTGGCCTCATGTCAGCTGTCCGTGCTTTTCAGAGGAAGCTGGAGGTTTTCAAATGTGACTTACAGCAGGACCTGCTTCACTTCCCAAGACTTTTGGATCAGACTGCAGGAAAACATCACCATCACAATTATGCTGAATTCCTGGACAAGCTGATCAAAAATTTCCAAAGTCGCTTTGAAGATTTCCCTCTGGGAAAACAAGTCTTGCTGTGCATTGAAAATCCATTTCTTGTCAAAAATATTGCAGAATTCTCAACTGAAGCCACGAAAGTCTTCCAATGGGCCAGTGCTGCTTCTCTGCAAACAGAGCTAATTGAGGACGAAGATGGTCACTGCAGCAGTTTAAACAACTGGTGGCACAAAGAAGGTGTCACCTTTCACACTAAAAGGCCTACCATGTCGTTTTTTGTGTATGGTTCGAAAGTTCTGGGGATTGCCTCTGTTTTTTTTGTTGGAGTTCTCTATTTGGAATTTGACCATCACTTTTCTGGACCTCGGACTGAATGGAAATTTGGCCGTTCTGTCACAACATATACCGACTCACGTTATGCCTTTGGCGTCTGCCATGACCATGGGGCAGTATGGAAGAACCGAGGTTTCCTTACTGCTAACAGAAAACCTGTGGCACATTCAAAATTGATTGATAAGTTATTGGAGAATCAATTGTTGCCAAAAGAAATCGCTATTTGTAAATGTGCGGCTCATACAAAAGCTAGTGATGAAGTATCCAAAGGTAATAACTTTGCCGATTCCGTAGCAAAAAACACGGCACTGAAGGGACACGTGCCAACTGAATTTATAGGTTTTACATCCCTTGCTACCGATAGCACCCAGTTACCACCGTCATTAAGTGAGATTCAGAGACTGGGTACTGACTGTGAGTTGAAAATTTGGATTTTACAGCAGGGGCAGAGAAATTTTGCCAGAATTGCTACATTTGCCACATTTGCGCAGCGAATAATGTGGGAAAGCAGAGTACGTCATGATGGATTTCATCAAATTGACACCATGCCAAGGAATCTAATACGAGAGGTAGTTCCCAGATGGGGAGTGCCTGAAAAATTGTCTAGTGACAATGGAACTCATTTTGTAAATAAAGTTATAACTGAATTGGCAAGAGGGCTAAGAATAAATTTGAAAACACACTGTTCCTATAGGCCACAGAGTGGAGGCGCTGTTGAGAGGTCTAACCAAACAATAAAGAGTAAATTGTGTAAAGTCATGGCAGAAACTGGAATGGCAATGGCATGGGTCCAAGCCTTACCCATTGTTTTGATGGCCATGAGAGCCCAAAAAGGGGCAAGAACAGCCCTCAGCCCACATGAAATTCTTACAGGTCATCCCATGCACATAGGAATTGAACCTCCTCCCCAGGAGGGTTTGGTGGGGGTAGATGAACAAATGAGAAAATATATGTTGTCATTAACAAAAACTATCAAAACAATCCATTCACAGGTTAAAGCTGCTCTGCCAGTTCCAGGTATTGGACCACAGCACTCTTACGGGACAGTGGTCTGGATCAAAGATCTCAGACGGAAGGCGTGGTGGTTAGGGTCGTACAAGATCATCCTAACAACAAAGACCGCAATCAAGGTCGCCGAACGTGACACCTGGGTTCACGCGTCACATTGTAAGTCCCACCAACACACAGATTCAAGCCAAAAGGAGTGTTTCAAGATGAGGGAAAGAGAGATGATGCCAGTTCCTGTTCATCATGACCACTCATCTGACGTAGACCAGCACCATTTCGGGTTGAACATGTTTTGGAAATATGCTAATTACACAGCCAAACAGCATGCACCTACTAAAAATTGCTATGTTTGTGCACAGGCCTCCTTCTCTGCCACGTACCCATATCCAATGTCTCCAGAGCAAGTAGAGGGTCATGAATTAAGGTGTATTATGATTCGTATAGCTGGACCAGGGTCGGAGTGTTCCCGAAAGATCCTCCGAAGAGGAGAACCCCTTGAGTGTGAGAATGTGACCACTACTGCACCAACCCTCTTACTTAGCAGTGAAGGAAAGAAAATGATTTGGCCTAACCCCGGACAAAAATTCAAAGAATGTTACCGATCTCATAAGGGGGTTAATTTTATAGGGATTCTTGAGGGGTCTGAGCACAGAGTGATTGCCAAGACAGCTCAATTCTGGAAAGCTTTTTTGATTCACAATGCTGTAACAGACTCAATGAACTGGATTAACAGAATTCACTACGAACTATTCCGATTTGCAAATGACACCCAATCGGCTTTGACATTTTTGAAAACTGAAGTAGGAGCCCTGAAACAATTGACTCTAGAAAACAGAATGGCTCTGGAAGCAATTCTAGCAGAGGAGGGGGGAGTTTGTGTGAAAATTGGTGAAGATTGCTGTACTTTTATTCCAGCTTATGATGCTGATGATGGTAGCATTTCAAAGGTGCTGGCAGACATGACAAAGGTGCGGAATGATCTGTGGCAGAATGAACAGGCCATGAATAAGGGGATAGGATGGAGTTTAGATTGGATCTCTGATGTCTTCCGCAATGTTTTTGGCAATATCTTCGGACCCATACTCAAGTTTTTGGCAATGATAATCACTACCTTGCTCATTGCAGTGCTGATAATTGGATGCTTAATGAGGTGTATTCGAGCTGTTTTGGGGAGATTTGTCTGAAGCATTGTGGAAGCAGCAGCAGGAGGAGGAGAATATGTGGATCTGCAGCCAGTTAACAGGAATGTTGAATACCAAAATCTTCATAATATGCGTCCATTTTAATCAGGCTATTTGATCATTTTGATTGAAGTAAAATATGATCAAGAGAGGGGAATTTGATAGAATTTTTTAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115920 lncRNA upstream 78159 1983469 ~ 1983707 (+) True G101891
TU115916 lncRNA upstream 80368 1981230 ~ 1981498 (+) True G101887
TU115912 lncRNA upstream 83923 1977675 ~ 1977943 (+) True G101883
TU115849 lncRNA upstream 105213 1844454 ~ 1956653 (+) True G101821
TU116085 lncRNA downstream 11088 2078266 ~ 2084974 (+) True G102039
TU116093 lncRNA downstream 32324 2099502 ~ 2101068 (+) False G102044
TU116092 lncRNA downstream 33109 2100287 ~ 2101068 (+) True G102044
TU116096 lncRNA downstream 36224 2103402 ~ 2103811 (+) True G102046
TU116161 lncRNA downstream 60311 2127489 ~ 2129122 (+) True G102093
CI01000017_02052993_02060890.mRNA mRNA upstream 302 2052993 ~ 2061564 (+) True CI01000017_02052993_02060890
CI01000017_01910759_01910947.mRNA mRNA upstream 150810 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
CI01000017_01737674_01834279.mRNA mRNA upstream 227492 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01654491_01655975.mRNA mRNA upstream 405684 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01605157_01612590.mRNA mRNA upstream 448858 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
TU114863 other upstream 1092547 927083 ~ 969319 (+) True G100957

Expression Profile