RNA id: TU114692


Basic Information

Item Value
RNA id TU114692
length 265
lncRNA type read_through
GC content 0.02
exon number 2
gene id G100803
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 130742 ~ 176661 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTTTTTTTTTTTTATTTCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114714 lncRNA upstream 99321 30540 ~ 31421 (+) True G100825
TU114712 lncRNA upstream 101746 28763 ~ 28996 (+) True G100823
TU114730 lncRNA downstream 29770 206431 ~ 206784 (+) True G100839
TU114699 lncRNA downstream 204081 380742 ~ 383464 (+) True G100810
TU114757 lncRNA downstream 229533 406194 ~ 406544 (+) True G100861
TU114760 lncRNA downstream 235227 411888 ~ 412113 (+) True G100864
TU114696 lncRNA downstream 241247 417908 ~ 478431 (+) True G100807
CI01000017_00104364_00117225.mRNA mRNA upstream 12741 104364 ~ 118001 (+) True CI01000017_00104364_00117225
CI01000017_00050292_00078906.mRNA mRNA upstream 50993 48626 ~ 79749 (+) True CI01000017_00050292_00078906
CI01000017_00213124_00215167.mRNA mRNA downstream 36320 212981 ~ 215481 (+) True CI01000017_00213124_00215167
CI01000017_00217246_00240217.mRNA mRNA downstream 40376 217037 ~ 240552 (+) True CI01000017_00217246_00240217
CI01000017_00243226_00251143.mRNA mRNA downstream 66286 242947 ~ 251195 (+) True CI01000017_00243226_00251143
CI01000017_00269400_00274920.mRNA mRNA downstream 92739 269400 ~ 275013 (+) True CI01000017_00269400_00274920
CI01000017_00275839_00288868.mRNA mRNA downstream 99178 275839 ~ 289106 (+) True CI01000017_00275839_00288868
TU114863 other downstream 750422 927083 ~ 969319 (+) True G100957

Expression Profile