RNA id: TU114699



Basic Information


Item Value
RNA id TU114699
length 2723
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G100810
representative True

Chromosome Information


Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 380742 ~ 383464 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATGATTTCAGTTAATTAGACATGCCTTTTGATTATTAACATGTAATTTATCCATTAAATTGGAATTAAAAAAAAAAAAAAAAAAACTGAATCCAGAAAAATTTAAATGGAAAATACAGAATTTGGAATAATAATAATAATAATAATAATAAATTGAAATTGGAAAAAAAAGGGAATTTGGCCTAAAAAAGGTACGAGCATCACTTCCAGACTGAAATCGGAAGCAGTTGACGCACTGAAGACCAGGGAAAACAGCAACAGACTTGACCTGATGTACTGTATTGAGATGAAAGTGTTTGAGAACCCTCATTCTTGAGCGGGGAAGCCTGATTAGGGCACTTCCTGTTTGGAGAAAAACAGTGTTTGATGGGAAAATAAATGAGGATCAGTCACATGATCCACCGCAGCAGCTAATGAAACCAGTTCGACATCACAGCAGTCTCATCCCGCTTTACTGATGATTTAATTACTGCGTCTCACACAGATAACGTCAAGTTGTGTGAGTTCTGAACGCTTTCCTCAGAATTACATGATCAGCAAATACAGTCCATCGGAGCACATTCTGAAGTGTTAAAATGACCCCAAAAATGATCATTCTGTCATAATTTACTCACTCTCATATCGCTCCAAACCGAATTTTAGTAACCAAAAAGGTTTGATGACCTTGACTTTCATTTAATAGACAAAACAAACAACTTATTCTACTAACCTGAACCTGAACCCAACAGTCTAGTTGACATGGTGCAAAGTTACTTATAGTTAGTCTAAAGTGGACCATTGAAAAAAGTGTAACCCATTTTTGTTTGAAATTTAAAAGTAACGTGTTACTTGTTACTTGAAAAAAGTAATCTGATTAAATGTAACTTGCATTACTGTCAAAGTTTGCACAGCAATGCTGTAAGAGCAGTTTCCTCTCAAAACATCTCTACACTCGGGTTTCTGTGACTCACAGAGGCATCGCGATCACTGACAACCCCCATCTCCAGCCCTGAGTGACCTTTGACCCCTGGAACATCCCCATATACAGCACTGCAGCCCCCTGAAGAGAAGTGACGGCTGGGAAAGAGCAATGAAGGTCTGCTTCTCTCCAGTGACAGAAGGAAGAGAGGATCAGCATATAGTCAGTCATGGTGCAAGACAGGAAGTCTCAGATGGAAACACCCTTCCTTCCTGCCAGCGCTGGGATCACAGGCAGCCGTTCGCATGACGCGCACACACACACATGCACGCACACACACATGCACGCACACACACACACATGCACGCACACAAGCACACGCAGCTCTGGTATTGAGAAATGCAAATCACAGATCATGCTTTGAGATAAACTATTCAACAGAAGAAAACACAGTCAAAAACAGATAAGAGATTAAAAGAGTCGCCATTCCAGTGAAGCTGCACTGCATGCAGTGACTCGTTTACACCGCGGTGACATTAACATACAAACACCTATAGAAGAATGTCGCAAGAAATGCACTTCCTTGTCTCTGGACCAACAGGAAACTGGCTCTCACATGATCTCCAGATGACCTGTATAAACACATCCTCTGAATGTCCAATGATAATATTAAAATGCGGCGGATTAAAGTGACTCTTCACTGACCCACTTCATATAAGTCACTGTGCTCAACTCTCATAAATATACAAAATCACACTCTCTTCACACTAACAGCTCCGAATGGGATTTTTCTCAGTAGTGTCATAGAAGATCATGATCAGTGGTCAGTTCTTAAAATGACCTTCTTTTTCTTAGTGTGAAGAACATTTTAATAGTGAAAAGAAGCTTTTGCGTGATGGATGTTAAAGGTTCTTCATGGAACCATCGATTTTTAGAGTGAACACACACTGTAAAGCCTGCAATAAACACGACTTGTTTTCTCTCCTTCAGCTTGAGCAATACTCCACGATGTTGCAAGAACGTCTCCTCCGAGAGTTCGCTGTCAAATCCCATGCAATAATCGAATTTGGAGAAAACAAAGAAACACAAGAAGAAGTCAGCCAGGCTTTTTAATGTTCACATCAGAAAGAATCAGAGCTCAGATGCAATCGGCGTTCACACCTTCAGTCACACGTTTGCATCTCCTGCTTTCACCAGCATTCCAGCAGTGGCTGAAGATGGAGATCCTCTGATCTTTAGAGATGTGGTGAACCACGAGGTGTGGCTGCTGATGATGAACAACCACTTCCACTTCCTCTCTGGAGACACGAAACATCATCATCAATCTTAACTTCTTCCTCAACATGCTGTTTTTAAACTAACAGAGGCACTGAGATATTATGGTTTCCCAGTTTACACTGAGATGTGTCCAAAAAACTCACAAAAACAATCATTCTGTCATCATTTACACACTACAATGTTGTTCAAACATGTATGACCTACTTCTTCTGTGAACCACAAGATTTTTTGTCCATCAGTGGAAGTAAATGGTGACCAAAACATGTTTCCAATATTTGGTTTGGTATTGGAATAACATGAGGGCAAATAAATTACATTTCATTAAAAACAGATATCCTACACTCTATAAAACACTGGGTTAAAAAACAACCCAAGTTATGCTGAATATAGACAAACCCAGTGATTGGGTTAAATGTTTGTCTCAACCTGCTGGGTAGTTTTATTCAACTCAACTATTGTTTAAAATGACTGTATGTCTGGCTTAAAATGAACCCAAAATATGTTGGAAATTAAAAATCAGACACATAATTACTAGAGGAAACAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114730 lncRNA upstream 173958 206431 ~ 206784 (+) True G100839
TU114692 lncRNA upstream 204081 130742 ~ 176661 (+) True G100803
TU114714 lncRNA upstream 349321 30540 ~ 31421 (+) True G100825
TU114712 lncRNA upstream 351746 28763 ~ 28996 (+) True G100823
TU114757 lncRNA downstream 22730 406194 ~ 406544 (+) True G100861
TU114760 lncRNA downstream 28424 411888 ~ 412113 (+) True G100864
TU114696 lncRNA downstream 34444 417908 ~ 478431 (+) True G100807
TU114764 lncRNA downstream 40135 423599 ~ 481038 (+) True G100868
TU114770 lncRNA downstream 65043 448507 ~ 451024 (+) True G100872
CI01000017_00358322_00362255.mRNA mRNA upstream 18024 358006 ~ 362718 (+) True CI01000017_00358322_00362255
CI01000017_00303881_00314010.mRNA mRNA upstream 66255 303881 ~ 314487 (+) True CI01000017_00303881_00314010
CI01000017_00290432_00292826.mRNA mRNA upstream 86108 290432 ~ 294634 (+) True CI01000017_00290432_00292826
CI01000017_00275839_00288868.mRNA mRNA upstream 91636 275839 ~ 289106 (+) True CI01000017_00275839_00288868
CI01000017_00269400_00274920.mRNA mRNA upstream 105729 269400 ~ 275013 (+) True CI01000017_00269400_00274920
CI01000017_00384546_00386526.mRNA mRNA downstream 938 384402 ~ 386831 (+) True CI01000017_00384546_00386526
CI01000017_00505305_00517048.mRNA mRNA downstream 120281 503745 ~ 517048 (+) True CI01000017_00505305_00517048
CI01000017_00542622_00545974.mRNA mRNA downstream 159158 542622 ~ 546304 (+) True CI01000017_00542622_00545974
CI01000017_00558732_00563124.mRNA mRNA downstream 175268 558732 ~ 563322 (+) True CI01000017_00558732_00563124
CI01000017_00565569_00581478.mRNA mRNA downstream 181417 564881 ~ 581631 (+) True CI01000017_00565569_00581478
TU114863 other downstream 543619 927083 ~ 969319 (+) True G100957

Expression Profile