RNA id: TU114696


Basic Information

Item Value
RNA id TU114696
length 421
lncRNA type read_through
GC content 0.44
exon number 2
gene id G100807
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 417908 ~ 478431 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGGAAGAGTTGTTGTAGTAGAGTGTTGTTGTCATGCCGTCATTTTACGCCGGACTGCTTCACAAACGAGGGTCAATTCAACACAAAAGATTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTCCACAGCGACTACATAAATTTATCCAACAACCATTCAGAAACGTCCAGTTTCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGATCAACCGAAGCACGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACAAATTTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114760 lncRNA upstream 5795 411888 ~ 412113 (+) True G100864
TU114757 lncRNA upstream 11364 406194 ~ 406544 (+) True G100861
TU114699 lncRNA upstream 34444 380742 ~ 383464 (+) True G100810
TU114730 lncRNA upstream 211124 206431 ~ 206784 (+) True G100839
TU114692 lncRNA upstream 241247 130742 ~ 176661 (+) True G100803
TU114694 lncRNA downstream 125939 604370 ~ 617022 (+) True G100805
TU114695 lncRNA downstream 212143 690574 ~ 694968 (+) True G100806
TU114857 lncRNA downstream 409724 888155 ~ 888997 (+) True G100953
TU114864 lncRNA downstream 491051 969482 ~ 969796 (+) True G100958
TU114953 lncRNA downstream 543598 1022029 ~ 1076674 (+) True G101035
CI01000017_00384546_00386526.mRNA mRNA upstream 31077 384402 ~ 386831 (+) True CI01000017_00384546_00386526
CI01000017_00358322_00362255.mRNA mRNA upstream 55190 358006 ~ 362718 (+) True CI01000017_00358322_00362255
CI01000017_00303881_00314010.mRNA mRNA upstream 103421 303881 ~ 314487 (+) True CI01000017_00303881_00314010
CI01000017_00290432_00292826.mRNA mRNA upstream 123274 290432 ~ 294634 (+) True CI01000017_00290432_00292826
CI01000017_00275839_00288868.mRNA mRNA upstream 128802 275839 ~ 289106 (+) True CI01000017_00275839_00288868
CI01000017_00505305_00517048.mRNA mRNA downstream 25314 503745 ~ 517048 (+) True CI01000017_00505305_00517048
CI01000017_00542622_00545974.mRNA mRNA downstream 64191 542622 ~ 546304 (+) True CI01000017_00542622_00545974
CI01000017_00558732_00563124.mRNA mRNA downstream 80301 558732 ~ 563322 (+) True CI01000017_00558732_00563124
CI01000017_00565569_00581478.mRNA mRNA downstream 86450 564881 ~ 581631 (+) True CI01000017_00565569_00581478
CI01000017_00643676_00677273.mRNA mRNA downstream 165245 643676 ~ 677299 (+) True CI01000017_00643676_00677273
TU114863 other downstream 448652 927083 ~ 969319 (+) True G100957

Expression Profile