Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU114770 |
| length | 923 |
| lncRNA type | antisense_over |
| GC content | 0.44 |
| exon number | 7 |
| gene id | G100872 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000017 |
| NCBI id | null |
| chromosome length | 2146858 |
| location | 448507 ~ 451024 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU114760 | lncRNA | upstream | 36394 | 411888 ~ 412113 (+) | True | G100864 |
| TU114757 | lncRNA | upstream | 41963 | 406194 ~ 406544 (+) | True | G100861 |
| TU114699 | lncRNA | upstream | 65043 | 380742 ~ 383464 (+) | True | G100810 |
| TU114730 | lncRNA | upstream | 241723 | 206431 ~ 206784 (+) | True | G100839 |
| TU114692 | lncRNA | upstream | 271846 | 130742 ~ 176661 (+) | True | G100803 |
| TU114694 | lncRNA | downstream | 153346 | 604370 ~ 617022 (+) | True | G100805 |
| TU114695 | lncRNA | downstream | 239550 | 690574 ~ 694968 (+) | True | G100806 |
| TU114857 | lncRNA | downstream | 437131 | 888155 ~ 888997 (+) | True | G100953 |
| TU114864 | lncRNA | downstream | 518458 | 969482 ~ 969796 (+) | True | G100958 |
| TU114953 | lncRNA | downstream | 571005 | 1022029 ~ 1076674 (+) | True | G101035 |
| CI01000017_00384546_00386526.mRNA | mRNA | upstream | 61676 | 384402 ~ 386831 (+) | True | CI01000017_00384546_00386526 |
| CI01000017_00358322_00362255.mRNA | mRNA | upstream | 85789 | 358006 ~ 362718 (+) | True | CI01000017_00358322_00362255 |
| CI01000017_00303881_00314010.mRNA | mRNA | upstream | 134020 | 303881 ~ 314487 (+) | True | CI01000017_00303881_00314010 |
| CI01000017_00290432_00292826.mRNA | mRNA | upstream | 153873 | 290432 ~ 294634 (+) | True | CI01000017_00290432_00292826 |
| CI01000017_00275839_00288868.mRNA | mRNA | upstream | 159401 | 275839 ~ 289106 (+) | True | CI01000017_00275839_00288868 |
| CI01000017_00505305_00517048.mRNA | mRNA | downstream | 52721 | 503745 ~ 517048 (+) | True | CI01000017_00505305_00517048 |
| CI01000017_00542622_00545974.mRNA | mRNA | downstream | 91598 | 542622 ~ 546304 (+) | True | CI01000017_00542622_00545974 |
| CI01000017_00558732_00563124.mRNA | mRNA | downstream | 107708 | 558732 ~ 563322 (+) | True | CI01000017_00558732_00563124 |
| CI01000017_00565569_00581478.mRNA | mRNA | downstream | 113857 | 564881 ~ 581631 (+) | True | CI01000017_00565569_00581478 |
| CI01000017_00643676_00677273.mRNA | mRNA | downstream | 192652 | 643676 ~ 677299 (+) | True | CI01000017_00643676_00677273 |
| TU114863 | other | downstream | 476059 | 927083 ~ 969319 (+) | True | G100957 |
