Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU114695 |
| length | 1014 |
| lncRNA type | antisense_over |
| GC content | 0.57 |
| exon number | 10 |
| gene id | G100806 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000017 |
| NCBI id | null |
| chromosome length | 2146858 |
| location | 690574 ~ 694968 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU114694 | lncRNA | upstream | 73552 | 604370 ~ 617022 (+) | True | G100805 |
| TU114764 | lncRNA | upstream | 209536 | 423599 ~ 481038 (+) | True | G100868 |
| TU114696 | lncRNA | upstream | 212143 | 417908 ~ 478431 (+) | True | G100807 |
| TU114770 | lncRNA | upstream | 239550 | 448507 ~ 451024 (+) | True | G100872 |
| TU114760 | lncRNA | upstream | 278461 | 411888 ~ 412113 (+) | True | G100864 |
| TU114857 | lncRNA | downstream | 193187 | 888155 ~ 888997 (+) | True | G100953 |
| TU114864 | lncRNA | downstream | 274514 | 969482 ~ 969796 (+) | True | G100958 |
| TU114953 | lncRNA | downstream | 327061 | 1022029 ~ 1076674 (+) | True | G101035 |
| TU114951 | lncRNA | downstream | 377294 | 1072262 ~ 1074172 (+) | True | G101034 |
| TU114966 | lncRNA | downstream | 393420 | 1088388 ~ 1090576 (+) | True | G101039 |
| CI01000017_00687984_00689034.mRNA | mRNA | upstream | 927 | 687984 ~ 689647 (+) | True | CI01000017_00687984_00689034 |
| CI01000017_00643676_00677273.mRNA | mRNA | upstream | 13275 | 643676 ~ 677299 (+) | True | CI01000017_00643676_00677273 |
| CI01000017_00565569_00581478.mRNA | mRNA | upstream | 108943 | 564881 ~ 581631 (+) | True | CI01000017_00565569_00581478 |
| CI01000017_00558732_00563124.mRNA | mRNA | upstream | 127252 | 558732 ~ 563322 (+) | True | CI01000017_00558732_00563124 |
| CI01000017_00542622_00545974.mRNA | mRNA | upstream | 144270 | 542622 ~ 546304 (+) | True | CI01000017_00542622_00545974 |
| CI01000017_00722020_00762518.mRNA | mRNA | downstream | 27052 | 722020 ~ 763373 (+) | True | CI01000017_00722020_00762518 |
| CI01000017_00969981_00977045.mRNA | mRNA | downstream | 274962 | 969930 ~ 977228 (+) | False | CI01000017_00969981_00977045 |
| CI01000017_01057310_01063843.mRNA | mRNA | downstream | 361261 | 1056229 ~ 1064326 (+) | True | CI01000017_01057310_01063843 |
| CI01000017_01067189_01070509.mRNA | mRNA | downstream | 372084 | 1067052 ~ 1070594 (+) | True | CI01000017_01067189_01070509 |
| CI01000017_01104045_01131388.mRNA | mRNA | downstream | 409077 | 1104045 ~ 1131465 (+) | True | CI01000017_01104045_01131388 |
| TU114863 | other | downstream | 232115 | 927083 ~ 969319 (+) | True | G100957 |
