RNA id: TU114966



Basic Information


Item Value
RNA id TU114966
length 793
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G101039
representative True

Chromosome Information


Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1088388 ~ 1090576 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCAAATCTTATCAAATCATAAACTCATTTCTAATTTAATACTGTCACATAACAGCAAAAATATACACAAAACTCAAAACAAAGACACACAATTAAATTAAAAAACAAAAAATCTGAATCATCACTTGGTTCGTTCCACCTCATATTCCAGCTACATCACGTCACGATCAACAACAGGTTTCCCGCCCGGCCTGGATCTATTGATTATTCATTGTTTGGTGGTGTTTTACATGGTGTTGTCGTAGGAGGGTGTGGAGTACTGCGGTGTCTGCGGGCCCTGCATGGCCCCGGTCGCTGCGCCCATAGCTGCCTGCTGCGCTGCCTGCTGAACGTGAGGGTTTTTCCAGGCGCCAGACACCCACTCCTCCTGCGCTTTACTCATGCTGCCTCCACTGCCTCGGTAGAAGTTATGGACCTTCGTGAGCGTGATAAATGAAATGGCAGCGACTGCAGTGAACATGATCGTGGGGATTAGCATAATGATGGAGGCAAAGATACTCGTGCCAAAGAAGGAGATGGTGCCCAACCAGCCGCTGAAACAGAGAGATGAGACCATAAGGTGCATAAAGTACAATAGAATAATACATACAGTATTCTAGTATCAGCATAAAGCTATACAGTTAGCATACAGAATCCTGATATTTGGGTTTGAATTAATTATCTTTTTTTTAGCATAATATGAGCATGAATTTGCACTTACCAAACACCCCATCCTGGAATACCAATGGCCTGAATTATAGCAATGAACAGTTGTGCCATAAAGACAAAGAAGAAAGCCATGAAGTAAAACGAGC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114953 lncRNA upstream 11714 1022029 ~ 1076674 (+) True G101035
TU114951 lncRNA upstream 14216 1072262 ~ 1074172 (+) True G101034
TU114864 lncRNA upstream 117724 969482 ~ 969796 (+) True G100958
TU114857 lncRNA upstream 199391 888155 ~ 888997 (+) True G100953
TU114695 lncRNA upstream 393420 690574 ~ 694968 (+) True G100806
TU115004 lncRNA downstream 57350 1147926 ~ 1148227 (+) True G101067
TU115034 lncRNA downstream 85580 1176156 ~ 1209849 (+) True G101091
TU114990 lncRNA downstream 100697 1191273 ~ 1194608 (+) True G101059
TU115087 lncRNA downstream 222151 1312727 ~ 1357699 (+) True G101143
TU114909 lncRNA downstream 263655 1354231 ~ 1401351 (+) True G101000
CI01000017_01067189_01070509.mRNA mRNA upstream 17794 1067052 ~ 1070594 (+) True CI01000017_01067189_01070509
CI01000017_01057310_01063843.mRNA mRNA upstream 24062 1056229 ~ 1064326 (+) True CI01000017_01057310_01063843
CI01000017_00969981_00977045.mRNA mRNA upstream 111160 969930 ~ 977228 (+) False CI01000017_00969981_00977045
CI01000017_00722020_00762518.mRNA mRNA upstream 325015 722020 ~ 763373 (+) True CI01000017_00722020_00762518
CI01000017_00687984_00689034.mRNA mRNA upstream 398741 687984 ~ 689647 (+) True CI01000017_00687984_00689034
CI01000017_01104045_01131388.mRNA mRNA downstream 13469 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_01534818_01538322.mRNA mRNA downstream 443700 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_01605157_01612590.mRNA mRNA downstream 514581 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01654491_01655975.mRNA mRNA downstream 563834 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01737674_01834279.mRNA mRNA downstream 645989 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
TU114863 other upstream 119069 927083 ~ 969319 (+) True G100957

Expression Profile