RNA id: TU115004


Basic Information

Item Value
RNA id TU115004
length 245
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G101067
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1147926 ~ 1148227 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGCCAACTAAATAGCAAATCAAGATAACGGATGTGTTGAAATCTACTGTGCTGCCTACCTAGACAGCATTCTGGGTACTGTAAGCATACTATATAGTGAGGTTGAAAGTTTTGAGACTACATGTATACATAAAATGTTTTTTTATTTATTTAGTTTTTGTGGAGATCATGCAACAAATTGTAATGCTACTAATTTTTTTATTTTATTATATATATATTTATTTTATTTTATTAAGGAGTCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114966 lncRNA upstream 57350 1088388 ~ 1090576 (+) True G101039
TU114953 lncRNA upstream 71252 1022029 ~ 1076674 (+) True G101035
TU114951 lncRNA upstream 73754 1072262 ~ 1074172 (+) True G101034
TU114864 lncRNA upstream 177262 969482 ~ 969796 (+) True G100958
TU114857 lncRNA upstream 258929 888155 ~ 888997 (+) True G100953
TU115034 lncRNA downstream 27929 1176156 ~ 1209849 (+) True G101091
TU114990 lncRNA downstream 43046 1191273 ~ 1194608 (+) True G101059
TU115087 lncRNA downstream 164500 1312727 ~ 1357699 (+) True G101143
TU114909 lncRNA downstream 206004 1354231 ~ 1401351 (+) True G101000
TU114915 lncRNA downstream 245789 1394016 ~ 1395844 (+) True G101005
CI01000017_01104045_01131388.mRNA mRNA upstream 16461 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_01067189_01070509.mRNA mRNA upstream 77332 1067052 ~ 1070594 (+) True CI01000017_01067189_01070509
CI01000017_01057310_01063843.mRNA mRNA upstream 83600 1056229 ~ 1064326 (+) True CI01000017_01057310_01063843
CI01000017_00969981_00977045.mRNA mRNA upstream 170698 969930 ~ 977228 (+) False CI01000017_00969981_00977045
CI01000017_00722020_00762518.mRNA mRNA upstream 384553 722020 ~ 763373 (+) True CI01000017_00722020_00762518
CI01000017_01534818_01538322.mRNA mRNA downstream 386049 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_01605157_01612590.mRNA mRNA downstream 456930 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01654491_01655975.mRNA mRNA downstream 506183 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01737674_01834279.mRNA mRNA downstream 588338 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01910759_01910947.mRNA mRNA downstream 762532 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
TU114863 other upstream 178607 927083 ~ 969319 (+) True G100957

Expression Profile