RNA id: TU115034


Basic Information

Item Value
RNA id TU115034
length 348
lncRNA type read_through
GC content 0.45
exon number 2
gene id G101091
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1176156 ~ 1209849 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCGTTCAGAAACGTCTAAAAGTTGTAACTTCTTCCTGGGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCGACCGAAGCGTGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCGGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACGGCGTGTTTTTGCTCACACCCAAATAGGGGCAAATTTGACAAGCTATAATAAATTATCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115004 lncRNA upstream 27929 1147926 ~ 1148227 (+) True G101067
TU114966 lncRNA upstream 85580 1088388 ~ 1090576 (+) True G101039
TU114953 lncRNA upstream 99482 1022029 ~ 1076674 (+) True G101035
TU114951 lncRNA upstream 101984 1072262 ~ 1074172 (+) True G101034
TU114864 lncRNA upstream 205492 969482 ~ 969796 (+) True G100958
TU115087 lncRNA downstream 102878 1312727 ~ 1357699 (+) True G101143
TU114909 lncRNA downstream 144382 1354231 ~ 1401351 (+) True G101000
TU114915 lncRNA downstream 184167 1394016 ~ 1395844 (+) True G101005
TU114911 lncRNA downstream 193611 1403460 ~ 1450896 (+) True G101002
TU114912 lncRNA downstream 207320 1417169 ~ 1419192 (+) False G101003
CI01000017_01104045_01131388.mRNA mRNA upstream 44691 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_01067189_01070509.mRNA mRNA upstream 105562 1067052 ~ 1070594 (+) True CI01000017_01067189_01070509
CI01000017_01057310_01063843.mRNA mRNA upstream 111830 1056229 ~ 1064326 (+) True CI01000017_01057310_01063843
CI01000017_00969981_00977045.mRNA mRNA upstream 198928 969930 ~ 977228 (+) False CI01000017_00969981_00977045
CI01000017_00722020_00762518.mRNA mRNA upstream 412783 722020 ~ 763373 (+) True CI01000017_00722020_00762518
CI01000017_01534818_01538322.mRNA mRNA downstream 324427 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_01605157_01612590.mRNA mRNA downstream 395308 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01654491_01655975.mRNA mRNA downstream 444561 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01737674_01834279.mRNA mRNA downstream 526716 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01910759_01910947.mRNA mRNA downstream 700910 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
TU114863 other upstream 206837 927083 ~ 969319 (+) True G100957

Expression Profile