RNA id: TU114915



Basic Information


Item Value
RNA id TU114915
length 1727
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G101005
representative True

Chromosome Information


Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1394016 ~ 1395844 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TAAATAAAACCATCCAGCATGTTGGTCAAACATTTAACTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATATGCATTGTAAAATATTTTTGTGAAAAAAATTTGTCAGATAAGCTAAACATGTCCATCTATATTACTACTTTATTTAAGTAAAAAAAAAAATATATATATATATATATGTATACTCGTCAACATGACTGCATTCTGTTACAGCAAGACAAGCACTTTTAGGGGTTTTAGGTCAGGTAGAAATAGCTTCTAATGTAGCAGCTTTCACTTTTTACAGGTAAATTACAATCCGTTTAATTGAATTTCATAAAAGGTTTCAATTAATCATCCACCCACTTGTTTATCTTTGATACATTAGCATTATGTAAGCTCAGAGAAGGAGCTAATTCTATATTACACAGACACTCTGGATGGTTCATACCACTTTATATATTTCACTGGACAAAACTTTGCTGGCATCTTCCTTCGGCTTGGTTATGACTGAGAGCATTGGGTTCAAATATGCTTTATTCTCATCAAGACCAGTTTGTACCAATATGTCAGTCTTTTTGTAAGCATTACGATTGACGGCCTTTCTTCTGGCAGCTTGGTTAAATTTGGAGCTCTGAAAAAGGTCATTAATGAATGCACGCTTTCTGAACATTTTCATTGCTGTTGTTGATATGTTTCGAGAACACAAGCTTGTTCTCTCTCTCTTTCTTTCTGTCTGTAGTCAGTCAGTTCCCTCAATATGACATGGCCACTCTGTCAGCTCTCTGGGAATTAGAGAGTGGGAGTCTATTACTCTGAATCTGGCAACCCTGAGGCAAAGCAAGCCCTCTCTCCTGCCTCTGTTCTGCCCGGTCCTGCAGTCCTGTTCACGAACCCGTCTGTACTCCTGGCCTGCTTGAGTGTATGTGCTGCTGAAACTACAGGATCAGGATGGCTGTGGGTTTGTTCTTTGGATGTGGGTCAATGACAGTGTGTTGATAATGCACAATGATGCAACTTCGCTGTAAAAAAAACAACTCATTGGTATGAAAGCTTATTTCTGCTGTGGAATAAAGAATTAAACAAGGTAATTGCAATGTTTTATCTCACAATTCAGACTTTTTTTCTTGCAATTGTGAGAAAAAAATCCAAATTGTGAGATATAATCTCAAAATTGTGAAATGTCACAGTTGGCTTTATTATTTTTTTATTCTGTGGCCGAAACAAGCGTCCATACTTTGGCACCCACAAGCTGTATTTTATTATTATTATTATTATTTTTCTATACAACACTCTGATCTCTTTCACACCAGCGTTCATCTCTGTTTGGCTTTACAGTTCATTCTCAGCACTCCCAGAGTCAGTATCAATCTCTCTGGATTCTTTCATCTCTAACTTTTCCTGAAGTGTAAGGATGTTAATCATGGTGTTCAGACCACTCTTTCCATTATTGGATCCTTTGATCATAGTTCTCAGCTAATCTTGTGTCGTTTGGATGTTATTTCTCTCCCCTCCCATCAAATAGCAGATGTATATCAGCCGGATCGCTGCTGTTGATTCAGTCGGCAGTTATTTGCAATTGGCTTTATGTAAAAAGGTTTTCTGAACTTGTGTTGTTATTCTGGTAACACTTTACAATAACAATTTTCAACATTATTATTGGTTTAACTTAAAAAAAAGGAAGTTACCTGGTTGCCTTAAAATTTTGAGTTTAAAAATTGAGTTAGGACAAAGAAGGAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU115087 lncRNA upstream 36317 1312727 ~ 1357699 (+) True G101143
TU115034 lncRNA upstream 184167 1176156 ~ 1209849 (+) True G101091
TU114990 lncRNA upstream 199408 1191273 ~ 1194608 (+) True G101059
TU115004 lncRNA upstream 245789 1147926 ~ 1148227 (+) True G101067
TU114966 lncRNA upstream 303440 1088388 ~ 1090576 (+) True G101039
TU114911 lncRNA downstream 7616 1403460 ~ 1450896 (+) True G101002
TU114912 lncRNA downstream 21325 1417169 ~ 1419192 (+) False G101003
TU114913 lncRNA downstream 21325 1417169 ~ 1419192 (+) True G101003
TU114914 lncRNA downstream 23833 1419677 ~ 1427727 (+) True G101004
TU115125 lncRNA downstream 189465 1585309 ~ 1585564 (+) True G101181
CI01000017_01104045_01131388.mRNA mRNA upstream 262551 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_01067189_01070509.mRNA mRNA upstream 323422 1067052 ~ 1070594 (+) True CI01000017_01067189_01070509
CI01000017_01057310_01063843.mRNA mRNA upstream 329690 1056229 ~ 1064326 (+) True CI01000017_01057310_01063843
CI01000017_00969981_00977045.mRNA mRNA upstream 416788 969930 ~ 977228 (+) False CI01000017_00969981_00977045
CI01000017_00722020_00762518.mRNA mRNA upstream 630643 722020 ~ 763373 (+) True CI01000017_00722020_00762518
CI01000017_01534818_01538322.mRNA mRNA downstream 138432 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_01605157_01612590.mRNA mRNA downstream 209313 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01654491_01655975.mRNA mRNA downstream 258566 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01737674_01834279.mRNA mRNA downstream 340721 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01910759_01910947.mRNA mRNA downstream 514915 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
TU114863 other upstream 424697 927083 ~ 969319 (+) True G100957

Expression Profile