RNA id: TU114913


Basic Information

Item Value
RNA id TU114913
length 2004
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G101003
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1417169 ~ 1419192 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATTTATCGCACGAACCAATCATGTCCAATCGTAACCCACTGGGGATTACTATCAGTTGCTAAACATTACTAATGTAAAACAGTCGTCAAATATTAAACGTTTAGCTACTTACATCTTACCACAAAGTGTTGCAGTGGAATTCGCACTCATCTTCTGTGAACAGTAAGCCCCGCCTTCTTTGATCTGATTGGCCAATTCACTCATTCTGACAGTGATGAGCGCTGTAAGACCGCTGAGGCAGAGCGGATGAAAAATATAATGTTTAAAACTTTCTGTCATTCTAACAACAAACAGCACAGTGGAGTGCAGAAACGGCATCAAGAATACCAGATTTTGGGGGGACAATTTGGCTATTTCTAATTATAGTTATTAATTATTTCTAATTATCAATGTCTGTGGTTGTTACGGCCCTGCTATAAAGAACCTTTGATGGAATGAAAACATTCCATGGATGTTAAAGTTTCTTCACAGAACCAGACGCCAATAAAGAACCTTTAGTTTTAAGAGTGTATTCGCTGAAAGGGTCCAAAAATGGTTATTTCATGGCATCGCTGCAAAAGAACCCTTTTGTAACCTTTATTTTGAAGGGTGTATTCCGTCTCCTTCTCTCCTTCAGTAGTCTCATCTGCTGTTATAAATAATGAGAGGTCTTTCTAAAACGGCATTGTTTTATTGCATTACAGTTAGAAATCACTCAGCCAAATGACCAGAACTTCAAAGAGCTGTACAGCCTTGCTCAGTACAATATGCAATAGCTCATATAGTAGAGCACAGCGCTGAAACACCAAGATCAATGATTCAATGTCCAGGGAACGCATTAACTGATAGCATGTCTTTACTAACAGTGGTATAAGCTGAATAATTCACCTTTGATCAATAACAATAGGAATGCACACGTAGGTGTAACAGCAACTCCACTTTGTCATATCTTAACTGTTTTCTCTTGGAATAGAGATAACAAAAGCCATTTATAAGTTGATATAGCCTGGGATCATCATAGAGAGACTATAGTGACAATAACCATGAGATCCATTTCATTTCCACCCAACTTGATGCACCAGGACGTCTGCATGATTGTAGAATGATGTTTGAGAGATGCTGATTTAATGGTTTGCAGCCAAAGTAATGATGAGCGAAATAGTCTTGCATTTTCTCTGTTGAGTAAAAATCTGTTGTATAAAGCACCAGAGAAACATGCAGCCTAAACACAGCATGACAGACAATAGTTTTCAGTGAAGCCGCTCAGTTTCCTTGCCAAAGTATGCTTGATATAAAATGATAGCTGTGACAATGAACATCGGAGTCTTTGTCTTCTCCTGAGGGCATTTATAGTATTAAATCCTGTAGATCAGTACAACTGCATCAAAATAAAACAGAAGCTGTGTTGAGGAATGATATCCAAACCCTGCCGCCAGTCTGGTGCGACTAAATACAAAGATCAAAAGGTTTTAAATACCTGCATGCTTCTTTTTTCAGTTTCTGGCTGGGGATAAAAGAGAGGGAAAGAAAAAAGAGAAAGTGAGAGGAGAAATTATCTTTGGTCAAATGCTAAGCCAGTTAGATTTGCACTTCTAGCGTAAACGAGAATTTGACAAAGTGACAAGGTTTTGATTAAAAATATTAAACATTAAAAATATCAACAATAATAGCAGCCTTCGCACATAAAAGAGAAAATACAATCAAGATATTAAAGAGAATCTGCATTTAAAACACAATAGCTCTTTCAAAGCAATATATATATATATGTATATATATATATATATATATATATATACACACACACACACACACATTTTCTGGGGTTTCCTTATGAAAGAGAAGTACACTTATTGTATTTTTTTTTTTTTAAAGCATACTTATTGCGAAAATAATATACTTTAATTATTTAAAAGTATACTGAAGTGTGAATTGAATGCAGTGTTTTCAGACACTTAATTGCATGTTACTTACAAATAAATTGAAATAATAAATAAAAATATTACATGCAGTTGAAAATTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114909 lncRNA upstream 15818 1354231 ~ 1401351 (+) True G101000
TU114915 lncRNA upstream 21325 1394016 ~ 1395844 (+) True G101005
TU115087 lncRNA upstream 59470 1312727 ~ 1357699 (+) True G101143
TU115034 lncRNA upstream 207320 1176156 ~ 1209849 (+) True G101091
TU114990 lncRNA upstream 222561 1191273 ~ 1194608 (+) True G101059
TU114914 lncRNA downstream 485 1419677 ~ 1427727 (+) True G101004
TU115125 lncRNA downstream 166117 1585309 ~ 1585564 (+) True G101181
TU115131 lncRNA downstream 177203 1596395 ~ 1596614 (+) True G101187
TU114917 lncRNA downstream 205377 1624569 ~ 1625221 (+) True G101007
TU115143 lncRNA downstream 243368 1662560 ~ 1663555 (+) False G101199
CI01000017_01104045_01131388.mRNA mRNA upstream 285704 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_01067189_01070509.mRNA mRNA upstream 346575 1067052 ~ 1070594 (+) True CI01000017_01067189_01070509
CI01000017_01057310_01063843.mRNA mRNA upstream 352843 1056229 ~ 1064326 (+) True CI01000017_01057310_01063843
CI01000017_00969981_00977045.mRNA mRNA upstream 439941 969930 ~ 977228 (+) False CI01000017_00969981_00977045
CI01000017_00722020_00762518.mRNA mRNA upstream 653796 722020 ~ 763373 (+) True CI01000017_00722020_00762518
CI01000017_01534818_01538322.mRNA mRNA downstream 115084 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_01605157_01612590.mRNA mRNA downstream 185965 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01654491_01655975.mRNA mRNA downstream 235218 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01737674_01834279.mRNA mRNA downstream 317373 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01910759_01910947.mRNA mRNA downstream 491567 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
TU114863 other upstream 447850 927083 ~ 969319 (+) True G100957

Expression Profile