RNA id: TU115131


Basic Information

Item Value
RNA id TU115131
length 220
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G101187
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1596395 ~ 1596614 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCTGGTATTACACTAATAAATACAGCATTTGCGTAGGCTAAATAGAACATCTGAAAACACAGCTTAAGTGTGCGTTAGTTCATTCATGTGTGTTTGTCTGTTACAAAGTGGCTGTGAGGAGAGATGCTGTCAGCAGCAGGTATTACAGTCTCTCTCACCCGCTCTTATTGCCTGTTCACAGTCTCCTTGCCTTTATATTTCCGTGTTGTCTTGTTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115125 lncRNA upstream 10831 1585309 ~ 1585564 (+) True G101181
TU114911 lncRNA upstream 145499 1403460 ~ 1450896 (+) True G101002
TU114914 lncRNA upstream 168668 1419677 ~ 1427727 (+) True G101004
TU114912 lncRNA upstream 177203 1417169 ~ 1419192 (+) False G101003
TU114913 lncRNA upstream 177203 1417169 ~ 1419192 (+) True G101003
TU114917 lncRNA downstream 27955 1624569 ~ 1625221 (+) True G101007
TU115143 lncRNA downstream 65946 1662560 ~ 1663555 (+) False G101199
TU115144 lncRNA downstream 65946 1662560 ~ 1666903 (+) True G101199
TU115858 lncRNA downstream 106885 1703499 ~ 1703994 (+) True G101830
TU115863 lncRNA downstream 115723 1712337 ~ 1712628 (+) True G101835
CI01000017_01534818_01538322.mRNA mRNA upstream 57802 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_01104045_01131388.mRNA mRNA upstream 464930 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_01067189_01070509.mRNA mRNA upstream 525801 1067052 ~ 1070594 (+) True CI01000017_01067189_01070509
CI01000017_01057310_01063843.mRNA mRNA upstream 532069 1056229 ~ 1064326 (+) True CI01000017_01057310_01063843
CI01000017_00969981_00977045.mRNA mRNA upstream 619167 969930 ~ 977228 (+) False CI01000017_00969981_00977045
CI01000017_01605157_01612590.mRNA mRNA downstream 8543 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01654491_01655975.mRNA mRNA downstream 57796 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01737674_01834279.mRNA mRNA downstream 139951 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01910759_01910947.mRNA mRNA downstream 314145 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
CI01000017_02052993_02060890.mRNA mRNA downstream 456379 2052993 ~ 2061564 (+) True CI01000017_02052993_02060890
TU114863 other upstream 627076 927083 ~ 969319 (+) True G100957

Expression Profile