RNA id: TU115143



Basic Information


Item Value
RNA id TU115143
length 611
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G101199
representative False

Chromosome Information


Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1662560 ~ 1666903 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTTGGTATTGCAGGATTGGCAGACAGATGACAGACTTGGAGCTTGAGCAGACACAGATGAACTCACGGGAGACGAGGAGACAACGAGGAGTCGAGGGAACACACAGGAGACAGGTAAGTATCTTCGGAGGAGTCCTTGAGGTAAGCAGAGTGGTGAGTACCATGTGCAAACGAGACCGGACAGTGACTGTGTAAGAACGTGAGCCTTTTGTGCTGCTGCGCCAGGCTCTGTGGAGACAGAAACAGAGGGATGGTGAGGCTTTAACAAAGAGACGTGGAAAGTGGGGTGAATTTTATATTCAGGTGGGAGCTGGAGTTGGTAGGTGACAGGGTTGATCTGCCGCAGGATGGTGAACGGGCCAATGAATCTGGGACTCAGTTTCCTACAGGGCAGGCGCATTCTGATGTCCCTTGTGGACAGCCAAACCTTCTGTCCTGGCTGGTAGTTGGGGGCGTTGGAGCGTCGAAGGTTGGCTGTCATCCTGCGCCTGCGTAGGGCTCATTGGAGCTGATGGTGCGCGGAGTCCCAGACCCTCTCGCTCTCTCGGAACCAGTAGTCGACCGCAGGTACGTCCGAGGGCTCTCCTGACCAGGGGAACAGTGGGGGTTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114917 lncRNA upstream 37339 1624569 ~ 1625221 (+) True G101007
TU115131 lncRNA upstream 65946 1596395 ~ 1596614 (+) True G101187
TU115125 lncRNA upstream 76996 1585309 ~ 1585564 (+) True G101181
TU114914 lncRNA upstream 234833 1419677 ~ 1427727 (+) True G101004
TU114912 lncRNA upstream 243368 1417169 ~ 1419192 (+) False G101003
TU115858 lncRNA downstream 39944 1703499 ~ 1703994 (+) True G101830
TU115863 lncRNA downstream 48782 1712337 ~ 1712628 (+) True G101835
TU115867 lncRNA downstream 52109 1715664 ~ 1715957 (+) True G101839
TU115840 lncRNA downstream 158341 1821896 ~ 1842938 (+) True G101812
TU115849 lncRNA downstream 180899 1844454 ~ 1956653 (+) True G101821
CI01000017_01654491_01655975.mRNA mRNA upstream 6378 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01605157_01612590.mRNA mRNA upstream 49552 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01534818_01538322.mRNA mRNA upstream 123967 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_01104045_01131388.mRNA mRNA upstream 531095 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_01067189_01070509.mRNA mRNA upstream 591966 1067052 ~ 1070594 (+) True CI01000017_01067189_01070509
CI01000017_01737674_01834279.mRNA mRNA downstream 73010 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01910759_01910947.mRNA mRNA downstream 247204 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
CI01000017_02052993_02060890.mRNA mRNA downstream 389438 2052993 ~ 2061564 (+) True CI01000017_02052993_02060890
CI01000017_02061927_02067003.mRNA mRNA downstream 398311 2061866 ~ 2067178 (+) True CI01000017_02061927_02067003
TU114863 other upstream 693241 927083 ~ 969319 (+) True G100957

Expression Profile